Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0431.Seq
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   4.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   9.2  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          20   9.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    20   9.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    20   9.2  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 206 QRPATST*LSPKRAF*LSTFCWYHPCFLRVGLRIR 310
           + P  +  L+P  A   S+  +Y PC + +G+  R
Sbjct: 180 EHPTCALDLTPTYAVVSSSISFYVPCIVMLGIYCR 214


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 228 QVEVAGRCHYQGESKKIHADSQEY 157
           Q E AG C  +GE    H +S  Y
Sbjct: 444 QREAAGNCRKRGEKIARHINSVSY 467


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 252 NSLPFVGIILASYVW 296
           NSLP V  I AS +W
Sbjct: 283 NSLPKVSYIKASEIW 297


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 160 VSASWSTPGARC 125
           V+ SWS PG  C
Sbjct: 248 VNGSWSLPGFVC 259


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 273 IILASYVWGY 302
           +ILAS+VW Y
Sbjct: 16  VILASFVWIY 25


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 95  SSNATDPSSAAELSDIFTNNFNGTRDTSDYN 3
           S + T+   + E   I +NN+N     ++YN
Sbjct: 289 SRDRTERERSKETKIISSNNYNYKNYNNNYN 319


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 95  SSNATDPSSAAELSDIFTNNFNGTRDTSDYN 3
           S + T+   + E   I +NN+N     ++YN
Sbjct: 300 SRDRTERERSKETKIISSNNYNYKNYNNNYN 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,106
Number of Sequences: 438
Number of extensions: 2376
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)