Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0431.Seq
(402 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13050.1 68416.m01626 transporter-related low similarity to a... 42 2e-04
At1g73220.1 68414.m08474 sugar transporter family protein contai... 33 0.054
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 29 1.5
At1g70100.3 68414.m08067 expressed protein 29 1.5
At1g70100.2 68414.m08066 expressed protein 29 1.5
At1g70100.1 68414.m08065 expressed protein 29 1.5
At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 compone... 27 3.5
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 27 4.7
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 27 4.7
At5g13740.1 68418.m01599 sugar transporter family protein contai... 27 6.2
At1g76430.1 68414.m08885 phosphate transporter family protein si... 26 8.2
>At3g13050.1 68416.m01626 transporter-related low similarity to
apical organic cation transporter [Sus scrofa]
GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2)
{Rattus norvegicus}; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 500
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +3
Query: 225 LDCRPKGHSNSLPFVGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSLANH--WL 398
L R + S+ F G+++ +Y WG VSD GRR +I +++F +S+ + + WL
Sbjct: 57 LSARQESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWL 116
Query: 399 V 401
+
Sbjct: 117 I 117
>At1g73220.1 68414.m08474 sugar transporter family protein contains
Pfam profile: PF00083 sugar (and other) transporter
Length = 539
Score = 33.5 bits (73), Expect = 0.054
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Frame = +3
Query: 186 WIHPGSDSGLRP-PLDCRPK---GHSNSLPFVGIILASYVWGYVSDT-KGRRFTLVIPLL 350
WI P SD+ + L C+ K ++L F+G + S V+GY++D+ GR+ TL++ +
Sbjct: 114 WIGPKSDTVVSEWNLICQHKFLVAVPSTLFFIGSLFGSGVYGYLADSWFGRKKTLLLSCV 173
Query: 351 ISFALN-CISSLANHWL 398
++F IS N W+
Sbjct: 174 LTFVTAFAISFSPNVWV 190
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 246 HSNSLPFVGIILASYVWGYVSDTKGRRFT 332
H+N PF+ ++LA+ WG +S R+T
Sbjct: 87 HTNGWPFLDLLLAALTWGSISVYLFGRYT 115
>At1g70100.3 68414.m08067 expressed protein
Length = 504
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = -2
Query: 254 VRMPFWATVKWRSQAAVTTRVNPKRSMPIPRSISELVNTRSTL*VPLPVLLRASSNATDP 75
++ P ++T + A+ + ++ RS S+S L+ + T LP+ L + +DP
Sbjct: 292 LKPPGFSTPRVSKSASTISSMSTSRSSVKKESVSTLLRKKQTAPKSLPISLNVDQSVSDP 351
Query: 74 SS 69
++
Sbjct: 352 TA 353
>At1g70100.2 68414.m08066 expressed protein
Length = 482
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = -2
Query: 254 VRMPFWATVKWRSQAAVTTRVNPKRSMPIPRSISELVNTRSTL*VPLPVLLRASSNATDP 75
++ P ++T + A+ + ++ RS S+S L+ + T LP+ L + +DP
Sbjct: 292 LKPPGFSTPRVSKSASTISSMSTSRSSVKKESVSTLLRKKQTAPKSLPISLNVDQSVSDP 351
Query: 74 SS 69
++
Sbjct: 352 TA 353
>At1g70100.1 68414.m08065 expressed protein
Length = 467
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = -2
Query: 254 VRMPFWATVKWRSQAAVTTRVNPKRSMPIPRSISELVNTRSTL*VPLPVLLRASSNATDP 75
++ P ++T + A+ + ++ RS S+S L+ + T LP+ L + +DP
Sbjct: 292 LKPPGFSTPRVSKSASTISSMSTSRSSVKKESVSTLLRKKQTAPKSLPISLNVDQSVSDP 351
Query: 74 SS 69
++
Sbjct: 352 TA 353
>At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 component,
putative / oxoglutarate decarboxylase, putative /
alpha-ketoglutaric dehydrogenase, putative similar to
SP|P20967 2-oxoglutarate dehydrogenase E1 component,
mitochondrial precursor (EC 1.2.4.2)
(Alpha-ketoglutarate dehydrogenase) {Saccharomyces
cerevisiae}; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF00676:
Dehydrogenase E1 component
Length = 1017
Score = 27.5 bits (58), Expect = 3.5
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = -2
Query: 203 TTRVNPK-RSMPIPRSISELVNTRSTL*VPLPVLLRASSNA--TDPSSAAELSDIFTNNF 33
+T PK +S P+PR++ T S L V L A DP+S E D F NF
Sbjct: 41 STICRPKAQSAPVPRAVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNF 100
Query: 32 NGTRDTS 12
G TS
Sbjct: 101 VGQAATS 107
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -1
Query: 207 CHYQGE---SKKIHADSQEYQRAGQHQEHVVSAVTSFVKSFF 91
CHY G+ ++ D + G+HQ + S+ SFV S F
Sbjct: 564 CHYAGDVTYQTELFLDKNKDYVVGEHQSLMNSSDCSFVSSLF 605
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -1
Query: 207 CHYQGE---SKKIHADSQEYQRAGQHQEHVVSAVTSFVKSFF 91
CHY G+ ++ D + G+HQ + S+ SFV S F
Sbjct: 547 CHYAGDVTYQTELFLDKNKDYVVGEHQALLSSSDCSFVSSLF 588
>At5g13740.1 68418.m01599 sugar transporter family protein contains
Pfam profile PF00083: major facilitator superfamily
protein
Length = 486
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 267 VGIILASYVWGYVSDTKGRRFTLVIPLLISFALNCISSL-ANHWL 398
+G L S WG V+D GR+ +++ + N + L +N W+
Sbjct: 89 LGRALTSVFWGIVADRYGRKPIILLGTISIAIFNALFGLSSNFWM 133
>At1g76430.1 68414.m08885 phosphate transporter family protein
similar to phosphate transporters from [Catharanthus
roseus] GI:2208908 and [Nicotiana tabacum] GI:12641853,
transmembrane protein [Solanum tuberosum] GI:17065936;
contains Pfam profile: PF00083 major facilitator
superfamily protein
Length = 532
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 249 SNSLPFVGIILASYVWGYVSDTKGRRFTLVIPLLI 353
S ++ +G L ++GY+ D GRR + LLI
Sbjct: 65 SYAIALLGTALGQLIFGYLGDRVGRRKVYGLSLLI 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,519,773
Number of Sequences: 28952
Number of extensions: 167313
Number of successful extensions: 476
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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