Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0429.Seq
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily ass...    28   2.9  
Z81587-1|CAB04701.1|  340|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 130 protein.
          Length = 756

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 130 NVFVNIVYTIYMIIIFNKKIGYNTISLYF 44
           N+F+ I+Y I M +I+ +KI    I+L F
Sbjct: 649 NLFIYIIYYILMKMIYREKIPKRAIALLF 677


>Z81587-1|CAB04701.1|  340|Caenorhabditis elegans Hypothetical
           protein T06G6.1 protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -1

Query: 190 TIMFPDFCFN*RKYKGRCNSNVFVNIVYTIYMIIIFNKKIGYNTI 56
           TI+   +CF+    +   N+N+F N    I ++ + N  +   T+
Sbjct: 37  TIVLISYCFSWLAIQALWNNNIFSNSTRLILIVCLLNSVVHQTTV 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,974,353
Number of Sequences: 27780
Number of extensions: 79218
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)