Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0429.Seq
         (403 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g07440.1 68417.m01142 replication protein-related weak simila...    29   0.88 
At5g35460.1 68418.m04217 expressed protein                             27   6.2  
At2g05880.1 68415.m00637 replication protein-related weak simila...    27   6.2  

>At4g07440.1 68417.m01142 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 261

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 293 ITGFDVKLVMCR*RYSSYRYHFVDLW 370
           I+GF V +   R RYSS+R+H   +W
Sbjct: 74  ISGFRVVVPQSRVRYSSFRFHIKFIW 99


>At5g35460.1 68418.m04217 expressed protein
          Length = 381

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 103 LYTQYLQKHYYCIDLCTYVN 162
           +Y ++ + HYY +D C Y N
Sbjct: 108 IYYRFKKWHYYLLDFCYYAN 127


>At2g05880.1 68415.m00637 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 256

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 293 ITGFDVKLVMCR*RYSSYRYHFVDLW 370
           I+ F V +   R RYSS+R+H   +W
Sbjct: 74  ISDFRVVVPQSRVRYSSFRFHIKFIW 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,328,285
Number of Sequences: 28952
Number of extensions: 66340
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)