Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0427.Seq
         (402 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    25   0.21 
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   2.0  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   2.0  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   2.6  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 302 DT*NSCLKVVSCGGIYLLMSLGS 234
           D  N  +++  C GI+LL++LGS
Sbjct: 660 DRGNFDIEIALCNGIFLLLTLGS 682


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 83  FYKQTFLLKNIVYRYFVXLGFILKYID 3
           FY   F L  I   Y   L  I KYID
Sbjct: 84  FYSYFFYLSYIYTTYSRKLSGIFKYID 110


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 83  FYKQTFLLKNIVYRYFVXLGFILKYID 3
           FY   F L  I   Y   L  I KYID
Sbjct: 40  FYSYFFYLSYIYTTYSRKLSGIFKYID 66


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
          protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 55 ILYIVILLXWGLSLNI 8
          ++Y+++   WG SL+I
Sbjct: 6  LIYLIVACCWGKSLSI 21


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,912
Number of Sequences: 336
Number of extensions: 1775
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)