Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0427.Seq
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    27   1.4  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.3  

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 62  AKMFVYKIVFLNALSTYLKVLFSQLQLKNLIVVKNWYKKYSHSVASALMALSVLS 226
           A  FV+ I  L AL   +   +S++  K  +V+   + +Y H VA  L    VL+
Sbjct: 3   ASFFVFAISALQALQASVASAYSEVPGKRSVVLNLQHSQYDH-VARKLERTKVLN 56


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 92  LNALSTYLKVLFSQLQLKNLIVVKNWYKKYSHSVASALMALSVLSVYQ 235
           LNA +    +L++Q  +KNL   KN + K    V  AL  L V  + Q
Sbjct: 282 LNANTDQSLILYTQSDVKNLHFGKNKHTKPHLLVMDALSNLYVWKILQ 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,522,140
Number of Sequences: 5004
Number of extensions: 26444
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)