Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0427.Seq
         (402 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.61 
SB_33922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 62   AKMFVYKIVFLNALSTYLKVLFSQLQLKNLIVVKN 166
            AK F Y+I F +ALS + K L ++L   +L+ V++
Sbjct: 4763 AKAFCYEIFFKSALSDHCKSLHAELDFYSLVCVED 4797


>SB_33922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +2

Query: 23  TPVQQNNDIQYF*AKMFVYKIVFLNALSTYLKVLFSQLQLKNLIVVKNWYKKYSHSVASA 202
           TP    +D QYF +K+  Y  V +  ++  L  L   L+   +   + +Y   S S+A A
Sbjct: 12  TPTVTPSDRQYFLSKVISYAAVSVLIIAGNLLCLVVFLRTPQMRRKRAYYLLISLSIADA 71

Query: 203 LMALSVL 223
           L+ +S++
Sbjct: 72  LVGISLV 78


>SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 12  FKDKPQXNKITIYNIFKQKCLFI 80
           FKDK    + T++N+ K  C+FI
Sbjct: 97  FKDKDGIGQGTLFNVIKVTCVFI 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,802,299
Number of Sequences: 59808
Number of extensions: 182055
Number of successful extensions: 280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)