Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0427.Seq
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   0.99 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   3.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   3.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   5.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   9.2  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              20   9.2  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 146 NLIVVKNWYKKYSHSVASALMALSVLSVYQSPRTLT 253
           N  ++     + ++++A+  M   +L++ +SPRTLT
Sbjct: 464 NQFILMTTVNEGNNNMAATYMNECLLNIQKSPRTLT 499


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 98  RLKTLFYKQTFLLKNIVYRYFVXLGFIL 15
           R KTLFY    +L  ++  +   L F L
Sbjct: 230 RRKTLFYTVNLILPTVLISFLCVLVFYL 257


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 80  YKQTFLLKNIVYRYFV 33
           YK+ F+  NI+ +YF+
Sbjct: 108 YKKVFMKDNILRQYFI 123


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 80  YKQTFLLKNIVYRYFV 33
           YK+ F+  NI+ +YF+
Sbjct: 91  YKKVFMKDNILRQYFI 106


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 328 GYCHCTIXLILETRVSRLSRV 266
           G+C   +   L T+ +R+SR+
Sbjct: 729 GFCFTVVYAALLTKTNRISRI 749


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 98  RLKTLFYKQTFLLKNIVYRYFVXLGFIL 15
           R KTLFY    ++  +   Y   L F L
Sbjct: 232 RRKTLFYTVNLIVPCVSISYLSVLAFYL 259


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 378 PHPYAHWRLRFHYIL*TVTAIV 313
           P+P  H+ L   YIL T  A++
Sbjct: 43  PNPSLHYLLALLYILFTFLALL 64


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -2

Query: 101 ERLKTLFYKQTFLLKNIVY 45
           +++   F+  +FL+ N+VY
Sbjct: 360 DKVSRFFFPFSFLILNVVY 378


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 101 ERLKTLFYKQTFLLKNIVYRYFV 33
           E LKT F+K     ++ V+R F+
Sbjct: 104 EDLKTFFHKIALTCEDDVHRKFL 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,966
Number of Sequences: 438
Number of extensions: 2003
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)