Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0426.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    24   7.6  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    24   10.0 

>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 93  LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTXSISLPDS 221
           L  P+G R  VS    + +++K+ C   P SRG+   ++ PD+
Sbjct: 6   LSSPSGAR--VSSVTVKNKVLKTPCFFLPTSRGTVPHLT-PDN 45


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 132 FECETRLVKSHCLEPPDSRGSTXSISLPDSARLASALEAFRIIP 263
           +E   R+ +  CLEP  +     S+SLP+  +L +  +A +I P
Sbjct: 406 YEGTKRMKRVSCLEPHGAMYLHPSVSLPE--KLITTAKAQKIQP 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,504,077
Number of Sequences: 5004
Number of extensions: 25566
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)