Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0426.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.44
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224 29 1.8
03_05_1088 + 30301654-30303480 29 1.8
07_03_0846 - 21983581-21986055 27 4.1
06_01_0957 - 7378608-7378662,7378828-7379012 27 4.1
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 4.1
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 27 4.1
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 5.5
01_05_0118 + 18335065-18335553 27 5.5
12_01_0497 + 3946179-3946322,3947274-3947342,3948733-3948829,395... 27 7.2
02_02_0156 - 7277793-7277875,7278535-7278638,7278808-7279211,727... 27 7.2
06_01_0655 + 4742267-4742531,4743313-4744136 26 9.5
05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204 26 9.5
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 26 9.5
02_03_0168 + 15932050-15932805 26 9.5
01_01_0785 - 6076089-6077615 26 9.5
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.44
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 232 ASLAESGKDMLXVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 98
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
Length = 787
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 48 GAVMHVLRKKTDSID----LRDPNGLRRRVSRFECETRLVKSH 164
G V+ L + TDS++ L +P+GL RRV F E+++ H
Sbjct: 340 GTVLRYLFQDTDSVNNSGGLLNPSGLLRRVRMFVPESQVTSMH 382
>03_05_1088 + 30301654-30303480
Length = 608
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Frame = -3
Query: 319 GHLVHALDRAXRWX---EATIRGIILNASKA--EASLAE-SGKDMLXVEPRESGG 173
G L A+D A R +I G IL+AS A +AE + K++L +EP E GG
Sbjct: 514 GRLSDAVDLARRMPMKPSRSIWGSILSASSACQNTEVAEIASKELLCLEPAEEGG 568
>07_03_0846 - 21983581-21986055
Length = 824
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 90 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTXSISLPDSARLASA 239
DL+D G +R +C+T S PD S S+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>06_01_0957 - 7378608-7378662,7378828-7379012
Length = 79
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 54 VMHVLRKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPP 179
++ LR T +I +R P L R S R+ SH + PP
Sbjct: 14 LLDALRTTTAAIRVRAPAALSRAASEKIAVPRIAPSHAVPPP 55
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 213 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 109
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 72 KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTXSISLPDSARLASALEAF 251
KKT ++ + P+ R + + + +V S C D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 181 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 83
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 223 AESGKDMLXVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 95
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
>12_01_0497 +
3946179-3946322,3947274-3947342,3948733-3948829,
3951827-3952033,3952149-3952264,3953189-3953293,
3953380-3953552,3953647-3953737,3953869-3954018,
3954482-3954724
Length = 464
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 295 RAXRWXEATIRGIILNASKAEASLA 221
R W A +RGI+ A++AEA +A
Sbjct: 26 RGAEWRAAQLRGILRMAAEAEAEIA 50
>02_02_0156 -
7277793-7277875,7278535-7278638,7278808-7279211,
7279403-7279543,7279700-7279904,7279984-7280093
Length = 348
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 273 LPSAGLS*TPLRPKPA*PNPAR 208
LP AG S + LRPKP P PAR
Sbjct: 299 LPKAGQS-SSLRPKPRDPAPAR 319
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 90 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTXSISLPDSARLAS 236
++RDP G+R + F +++ E RG ++ PD A +AS
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS 178
>05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204
Length = 306
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = -1
Query: 186 ESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFFLTRASRLRRSGYNSVRCR 16
++ EA+ + A A R A C A RLR +GYNS CR
Sbjct: 87 DAEEAMRQMRAAAAGACSCASRGAAAAAAGSGGCRSCTLRFLAERLRDAGYNSAICR 143
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 326 QFRTFGSCTRPSXPVVRSYHPRDYPERL 243
Q+ + G C R + P+ H +YPE++
Sbjct: 601 QWNSGGRCHRETEPIFNRTHLAEYPEKM 628
>02_03_0168 + 15932050-15932805
Length = 251
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +2
Query: 248 VQDNPADGSFXPPXRSVECMNQMSETAVPXVLSSITIATT 367
++DNP + F PP + + ++Q++ + LS +++ T
Sbjct: 210 LKDNPQESEFRPPSGTAKTLSQIAVDDLVADLSDLSLQQT 249
>01_01_0785 - 6076089-6077615
Length = 508
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 213 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAH 106
A + SLWSPES E + + Q R+V H
Sbjct: 336 AEVASLWSPESGEPITAEKIAEMKYTQAVAREVVRH 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,376,812
Number of Sequences: 37544
Number of extensions: 191686
Number of successful extensions: 522
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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