Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0426.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.35 
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         28   2.4  
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)                     27   4.3  
SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87)                27   4.3  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 27   5.6  
SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)                 26   9.8  

>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 126 SRFECETRLVKSHCLEPPDSRGSTXSISLPDSARLASALEAFRIIPR 266
           +R+  E +L + H L PP        +S   SA  +SA   F  IPR
Sbjct: 35  ARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPR 81


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 81  DSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDS 185
           DS  ++DP G+RR++  F  E R V    L+  D+
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 102  PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTXSISLPDSARLASALEAF 251
            PN LR R S F         L    CL PP++ G    I L D + LA    A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299


>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1568

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 365 SLR**YCSVRXEPQFRTFGSCTRPSXPVVRSYHPRDYPE 249
           SLR   C+     +F+ FG C R + P V +  P   P+
Sbjct: 622 SLRLKACTDNTRTRFKAFGECGRTTVPPVSTSSPTPTPQ 660


>SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87)
          Length = 339

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 310 VHALDRAXRWXEATIRGIILNASKAEASL--AESGKDMLXVEPRE 182
           VHA  R+ R  +A +RG++ NA++  + L  A +G D+      E
Sbjct: 37  VHAAVRSARELDARVRGLVRNATETRSLLLRAAAGVDVAIANASE 81


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 8    SEPRHRTELYPDLRSRDARVKKKNR*HRSPRSKWAS 115
            + PRH  EL PD+R  D RV ++ R  R P SK A+
Sbjct: 1466 TRPRHPDELRPDIR-HDIRVAQERREGR-PDSKDAT 1499


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -3

Query: 310  VHALDRAXRWXEATIRGIILNASKAEASL--AESGKDM 203
            VHA  R+ R  +A +RG++ NA++  + L  A +G D+
Sbjct: 1416 VHAAVRSVRELDARVRGLVRNATETRSLLLRAAAGVDV 1453


>SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -3

Query: 286 RWXEATIRGIILNASKAEASLAESGKDMLXVEPRESGGSKQC 161
           RW    +   +LN S  + S    G D + +  R++  +K C
Sbjct: 144 RWISGALLKEVLNGSGYKTSYVARGCDRMSISDRQTPENKHC 185


>SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)
          Length = 959

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
 Frame = -1

Query: 243 LRPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRC-----YR 79
           LRP PA P P+       PE R AL     L  + +  A        D+G        Y 
Sbjct: 29  LRPSPAAPAPSSTSKSRRPERRTAL-VARELARYNVDIAALSETRFPDKGQLSEIGGGYT 87

Query: 78  FFFLTRASRLRR 43
           FF+  R+S  RR
Sbjct: 88  FFWSGRSSEERR 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,844,308
Number of Sequences: 59808
Number of extensions: 210850
Number of successful extensions: 612
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)