Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0426.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical ...    28   2.8  
AC025722-2|AAK68508.1|  605|Caenorhabditis elegans Hypothetical ...    27   3.7  
Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    27   6.5  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    27   6.5  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    27   6.5  
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    27   6.5  
AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical
           protein Y48G10A.2 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/51 (21%), Positives = 28/51 (54%)
 Frame = -3

Query: 271 TIRGIILNASKAEASLAESGKDMLXVEPRESGGSKQCDFTSRVSHSKRETR 119
           +++G I + +    ++    K ++  EP+E+   +  D+ + ++HSK E +
Sbjct: 306 SLKGQIKSENYTSIAVTRLYKMLIRTEPKETALRRAADYLNELTHSKTEKK 356


>AC025722-2|AAK68508.1|  605|Caenorhabditis elegans Hypothetical
           protein Y50D4C.3 protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 311 GSCTRPSXPVVRSYHPRDYPERL*GRSQPSRIRQGYAXCGAPR 183
           GS   P  P    +HPR + ++      P    QG +  GAPR
Sbjct: 487 GSQQGPPPPPPSQHHPRGFQQQAQQNPPPRGNNQGQSYHGAPR 529


>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 249 TPLRPKPA*PNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 100
           T L   PA PN AR  S W  E+  + NN     + +  +I  +R++   H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 249 TPLRPKPA*PNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 100
           T L   PA PN AR  S W  E+  + NN     + +  +I  +R++   H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -1

Query: 213  ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFFLTRASR 52
            A++  +W  E   A   +  LV      A+ DVEA L +GDR   F   T ASR
Sbjct: 1288 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDR--PFMIYTDASR 1338


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -1

Query: 213  ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFFLTRASR 52
            A++  +W  E   A   +  LV      A+ DVEA L +GDR   F   T ASR
Sbjct: 1191 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDR--PFMIYTDASR 1241


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -1

Query: 213  ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFFLTRASR 52
            A++  +W  E   A   +  LV      A+ DVEA L +GDR   F   T ASR
Sbjct: 1202 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDR--PFMIYTDASR 1252


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 249 TPLRPKPA*PNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 100
           T L   PA PN AR  S W  E+  + NN     + +  +I  +R++   H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171


>AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical
           protein H42K12.3 protein.
          Length = 522

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -3

Query: 223 AESGKDMLXVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLNTC 59
           A+S + +   EP E+  S   D+T     ++R+ RRR     R+ + ++  +  C
Sbjct: 368 ADSSRAIEPQEPEETYFSDWSDWTPCTKSNERQVRRRRCLNLRKCLGALMQVQNC 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,541,413
Number of Sequences: 27780
Number of extensions: 150435
Number of successful extensions: 374
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)