Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0425.Seq
         (388 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   1.4  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   1.8  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   2.4  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 73  HECNYRREARPTHSFIIWRM 14
           H C+   ++ PT S  +W M
Sbjct: 347 HRCHGNLQSCPTRSHAVWEM 366


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 109 FLSEXXSYCSNYHECNYRREARPTHSFII 23
           FL    SY   YH+  YR+  R    FII
Sbjct: 18  FLLICDSYLKIYHKEKYRKFCRILKYFII 46


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 133 LHNLLALDFLSEXXSYCSNYH 71
           +H  + L F  E   YC NY+
Sbjct: 61  IHIKIVLMFFKEASLYCFNYY 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,346
Number of Sequences: 336
Number of extensions: 1256
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8119573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)