Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0425.Seq
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    28   0.44 
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    26   1.8  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    26   1.8  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    25   4.1  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    24   7.2  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    24   7.2  

>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 246 LIPMKRTFNYTDKCRLNQ*PFTPRYRVTLNXFKINFETSIYYRD 377
           L+     F  TDKC ++    T +   TLN F  +F    Y +D
Sbjct: 290 LLSFVMLFENTDKCLIDSECLTSKKSFTLNDFTYDFRLPWYLKD 333


>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 40  LGAPHAYSCIHGSSNNNYXLQIENRGPKGY 129
           LG    Y     S N+N  +QIENRG   Y
Sbjct: 18  LGITFIYYLFTPSVNSNAKVQIENRGGNSY 47


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 355 SKLILNXFXVTLYRGVKGYWFKR 287
           SK++ N    TLYRG+   WF++
Sbjct: 164 SKIVTNEGFGTLYRGLAPLWFRQ 186


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 46  APHAYSCIHGSSNNNYXLQIEN 111
           AP++Y+  H + + NY  Q+ N
Sbjct: 510 APNSYASTHSTESENYPQQVTN 531


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +1

Query: 49  PHAYSCIHGSS--NNNYXLQIENRGPK 123
           P    C++  S  NNN+ +  E+ GPK
Sbjct: 25  PETLKCLYDESEDNNNFTMHSESIGPK 51


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -1

Query: 91  SYCSNYHECNYRREARPTHSFIIWR 17
           SY    H+C Y     P    +IWR
Sbjct: 56  SYTKVVHDCTYALVINPYDKKVIWR 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,272,961
Number of Sequences: 5004
Number of extensions: 19092
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)