Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0425.Seq
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    29   1.1  
AL132949-18|CAB70109.2|  725|Caenorhabditis elegans Hypothetical...    28   2.0  

>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 197 GKHIVEVSFKSLTVVDANTNETDL 268
           G HIV +S  SLT+ DA  +ET++
Sbjct: 31  GAHIVAISMHSLTIDDAEDSETEV 54


>AL132949-18|CAB70109.2|  725|Caenorhabditis elegans Hypothetical
           protein Y53F4B.20 protein.
          Length = 725

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 306 FTPRYRVTLNXFKINFETSIYYRDGGD 386
           F  RY +T++ +K    ++IYYRD G+
Sbjct: 135 FPGRYTLTIHRYKGLIGSAIYYRDAGE 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,917,394
Number of Sequences: 27780
Number of extensions: 103134
Number of successful extensions: 156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)