Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0425.Seq
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   2.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   2.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   2.8  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   4.9  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 67  CNYRREARPTHSFIIWRM 14
           C+Y    + +++F +WRM
Sbjct: 341 CSYMAHEKLSYAFSVWRM 358


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 272 IKGPFHWY*HQQLLN 228
           I+G F+++ H+Q+LN
Sbjct: 253 IRGEFYFFLHKQVLN 267


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 272 IKGPFHWY*HQQLLN 228
           I+G F+++ H+Q+LN
Sbjct: 253 IRGEFYFFLHKQVLN 267


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 34  SELGAPHAYSCIHGSSNNNYXLQIENRGPKGYV 132
           S +G    Y  +    NN    Q+E R P  Y+
Sbjct: 277 STVGTIFGYQDMRNRGNNFPVYQVEKRSPFRYL 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,315
Number of Sequences: 438
Number of extensions: 1521
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)