Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0425.Seq
         (388 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02150.2 68416.m00185 TCP family transcription factor, putati...    28   2.5  

>At3g02150.2 68416.m00185 TCP family transcription factor, putative
           similar to transcription factor PCF6 [Oryza sativa
           (japonica cultivar-group)] GI:20975255; contains Pfam
           profile PF03634: TCP family transcription factor
          Length = 355

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 58  YSCIHGSSNNNYXLQIENRGPKGYVRFN 141
           YS +HGSS+NN    I+NR     V+FN
Sbjct: 302 YSLLHGSSSNNGGRDIDNR--MSSVQFN 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,404,705
Number of Sequences: 28952
Number of extensions: 90337
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)