Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0424.Seq
(400 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 30 0.12
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.15
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 29 0.35
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 0.46
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 0.81
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 0.81
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 1.1
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 27 1.1
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 1.9
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 25 4.3
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 25 5.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 24 7.6
SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 7.6
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 24 7.6
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 24 7.6
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 24 7.6
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 24 10.0
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 24 10.0
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 24 10.0
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 24 10.0
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 30.3 bits (65), Expect = 0.12
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = -1
Query: 247 VKREDTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDPITN 80
+ R YE+ ++ +K + +++ ++ EE IEPE+ + L + + V+ +TN
Sbjct: 328 LSRAPHYELDNGNRLLSKRKLHDLLQQIDSEEKIEPEVEELLLE-IADEFVESVTN 382
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.15
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -1
Query: 181 GIIENVEREETIEPELSDTLSDAVPINVVD--PITNNHINLK 62
G+I+N+E + I E SDTL + + IN ++ N++ NLK
Sbjct: 280 GLIQNLEDSDDIHEESSDTLEEPLLINELNRTSFLNSNNNLK 321
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 28.7 bits (61), Expect = 0.35
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -2
Query: 309 DEVKTGDKESDKIETSGIERM*NVKTHTKLKQTIKSLIKSKLPVL 175
DE+ + D+IE +GI R V+ + +++ T+KSL K+ + V+
Sbjct: 398 DELVDSARAGDRIEVTGIFRCVPVRLNPRMR-TVKSLFKTYVDVV 441
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.3 bits (60), Expect = 0.46
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = -2
Query: 399 EANFSVGKNEKIDSDEQMIGIAANLQATEKDEVKTGDKESDKIETSGIERM*NVKTHTKL 220
E+NFS ++E D Q++ + L EKD K + S + E+ N +
Sbjct: 193 ESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEKIKEDVSSIKASLAEEQASNKSLRGEQ 252
Query: 219 KQTIKSLIKSKLPV 178
++ K L+ S V
Sbjct: 253 ERLEKLLVSSNKTV 266
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 0.81
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +2
Query: 137 FRFNSLF---TFYILYNTGSFDFIRLFIVCFNFVCVFTFHILSIPEVSILSDSLSPVLTS 307
F F+ LF +I+Y + SF + F VCVF + S+ + L+ P+L
Sbjct: 131 FSFSFLFFLSQIFIVYFS-SFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILFLPLLLR 189
Query: 308 SFSVACKL 331
FS +L
Sbjct: 190 VFSTLSRL 197
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 0.81
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -1
Query: 244 KREDTYEVKTDDKKSNKIETS----GIIENVEREETIEPELSDTLSDAVPINVVDPITN 80
K ED+++ KTD++ + T+ ++ N E E E DT + A P ++V+ N
Sbjct: 70 KHEDSFDSKTDEEYLQNVSTTTEDVSMLINTPVTEKYEQEHRDTSAQATP-SIVEQSPN 127
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 1.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 238 EDTYEVKTDDKKSNKIETSGIIENVEREETI 146
E+ VKT++KK + E+S E+ E EE +
Sbjct: 123 EEEVIVKTEEKKESSSESSSSSESEEEEEAV 153
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 27.1 bits (57), Expect = 1.1
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 245 HILSIPEVSILSDSLSPVLTSSFSVACKLAAMP 343
+IL+ S +S LS + +S+F+ CK++AMP
Sbjct: 33 NILNFEIPSGVSCQLSSLTSSNFASGCKISAMP 65
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 1.9
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -1
Query: 253 ENVKREDTYEVKTDDKKSNKIETSGIIENVEREET 149
+N K++ +T KKS K+ETS +++ ++ +
Sbjct: 53 KNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSS 87
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 202 SNKIETSGIIENVEREETIEPELSDTLSDAVPIN 101
SN E+ GII+NV E E+++ + +N
Sbjct: 207 SNDQESDGIIDNVSANEMERREIAELARETTELN 240
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 24.6 bits (51), Expect = 5.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 283 FFIACFNFVFFSCL 324
F + FNF+FF+CL
Sbjct: 124 FLLLPFNFIFFACL 137
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -1
Query: 247 VKREDTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPIN 101
V +ED + D + K + + ++V ++ I+P++ + S P N
Sbjct: 4032 VSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPEN 4080
>SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 24.2 bits (50), Expect = 7.6
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 235 LHVSHSLN-TRSFDFIRFFIACFNFVFFSCL*ISSYADHLFIRIDFLIF 378
L V ++N T F F + I C +F+ +S + I + + + +FL F
Sbjct: 53 LKVDQTINKTNRFIFRKLKILCPSFLNYSFINIYCFGPYTMVGEEFLFF 101
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 24.2 bits (50), Expect = 7.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 187 TSGIIENVEREETIEPELSDTLSDAVP 107
T G++ ++RE P+L + DAVP
Sbjct: 913 TGGVLMLIDRESDKAPDLIELNRDAVP 939
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +2
Query: 155 FTFYILYNTGSFDFIRLFIVCFNFVCVFTFHILSIP 262
F FY L G FI + ++C TF + P
Sbjct: 53 FRFYGLNTLGKIIFIFQLSILTLYICCITFRFIRYP 88
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 24.2 bits (50), Expect = 7.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 241 REDTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTLS 119
+ED+ + K D K S S +IE + P+ DT++
Sbjct: 199 KEDSNDTKNDKKISKNEVDSSLIEASPLTGQVPPKFLDTIA 239
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 94 DPITNNHINLKPDNFWINKYATD 26
D IT H+N+ PD ++NK D
Sbjct: 373 DDIT--HLNISPDRLYLNKKPED 393
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 318 TEKDEVKTGDKESDKIETSGIERM*NVK 235
T+K + K DKES K SG++++ K
Sbjct: 171 TQKRKRKVRDKESKKSSKSGLKKVSGTK 198
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 23.8 bits (49), Expect = 10.0
Identities = 15/67 (22%), Positives = 25/67 (37%)
Frame = -1
Query: 235 DTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDPITNNHINLKPD 56
D E+ T +SN EN+ ++ I+ + D P NV I +N+
Sbjct: 445 DNEEINTSISQSNTSPNLNTHENIPKQMEIQSDDRMVTEDLNPYNVEVDIPEISLNISDS 504
Query: 55 NFWINKY 35
+ Y
Sbjct: 505 KIPTSAY 511
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 372 EKIDSDEQMIGIAANLQATEKDEVKTGDKESDK 274
E++ +DEQM+ + L ++ K +KE K
Sbjct: 745 EELMNDEQMLALDEKLAEVFRERKKASNKEKKK 777
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,443,643
Number of Sequences: 5004
Number of extensions: 25639
Number of successful extensions: 122
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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