Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0424.Seq
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486... 29 1.0
05_05_0271 + 23733626-23733965,23734558-23735132,23736065-23736070 29 1.4
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413... 29 1.8
05_01_0372 - 2913518-2916562,2916674-2917528 28 3.1
03_05_0378 - 23619169-23619225,23619389-23619454,23620052-236202... 27 5.5
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 27 7.2
07_03_1076 + 23779941-23779988,23780102-23780191,23781580-237816... 27 7.2
04_03_0870 + 20431215-20431419,20432559-20433439,20433829-204339... 27 7.2
06_03_0992 - 26680555-26680840,26680893-26681279,26681364-266824... 26 9.5
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 26 9.5
>05_01_0554 +
4856131-4856605,4858051-4858098,4860611-4860792,
4861409-4863136
Length = 810
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -1
Query: 226 EVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPI 104
E + K++++E+ G+ NVE ++ E+++ S AVPI
Sbjct: 426 EEAVEANKASRLESEGVEVNVELQKEEATEVNEARSQAVPI 466
>05_05_0271 + 23733626-23733965,23734558-23735132,23736065-23736070
Length = 306
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = -2
Query: 399 EANFSVGKNEKIDSDEQMIGIAANLQATEKDEVKTGDKESDKIETS 262
+ F+VG + + ++G+AA + +++ K+G +E DK E +
Sbjct: 78 QMGFAVGGGSVVVATASLVGLAATILCFKQNTDKSGAREEDKEEVT 123
>09_02_0088 +
4136698-4136857,4137530-4137558,4137992-4138954,
4138973-4139301,4139398-4139485,4139766-4139864,
4139935-4140245,4140532-4140685
Length = 710
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -1
Query: 226 EVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPI 104
E + K++++E+ G+ NVE ++ E+++ S AVPI
Sbjct: 254 EEAVEANKASRLESEGVEVNVELQKEEAIEVNEARSQAVPI 294
>05_01_0372 - 2913518-2916562,2916674-2917528
Length = 1299
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/44 (25%), Positives = 27/44 (61%)
Frame = -1
Query: 253 ENVKREDTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTL 122
E+ ++E T + + + ++ S + E+ E+E+T+E E S+++
Sbjct: 306 ESTEKEQTVDDTSSEMIAHVSAESAVEESTEKEQTVESEASESV 349
>03_05_0378 -
23619169-23619225,23619389-23619454,23620052-23620224,
23620454-23620664,23621056-23621280,23622157-23622493,
23624200-23624627
Length = 498
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 381 GKNEKIDS-DEQMIGIAANLQATEKDEVKTGDKESDKIETSGIERM 247
G++E I+S D + G+AA D+ + ++E ++ ET+G ++M
Sbjct: 41 GRDEDIESEDSDLEGVAAAAAGGVGDDGEEEEEEEEEQETAGEKKM 86
>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 226 EVKTDDKKSNKIETSGIIENVEREETIE 143
E KTD++ K+E+ I E +ER E +E
Sbjct: 1049 EDKTDEETKKKLESMDIDEILERAEKVE 1076
>07_03_1076 +
23779941-23779988,23780102-23780191,23781580-23781663,
23781792-23782010,23782873-23782974,23783809-23784207,
23784332-23784561,23784749-23784842,23784931-23785113,
23785254-23785351,23785831-23786143
Length = 619
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 335 LLIYKQLKKTKLKQAIKNLIKSKL 264
LL+ K TKL++ I+ +IKSKL
Sbjct: 425 LLLEVNTKTTKLREVIEKIIKSKL 448
>04_03_0870 +
20431215-20431419,20432559-20433439,20433829-20433990,
20434742-20435001,20435110-20435200,20435487-20435675
Length = 595
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 154 ETIEPELSDTLSDAVPINVVDPITNNHINLKPDNFWIN 41
+ +E + + T +D VP ++VD + +P WIN
Sbjct: 31 DDLELQAAATTADGVPPSIVDSELRTGYHFQPPKNWIN 68
>06_03_0992 -
26680555-26680840,26680893-26681279,26681364-26682441,
26682537-26683083
Length = 765
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 166 VEREETIEPELSDTLSDAVPINVVDPITNNHINLK 62
++R+E I ++ + D P NVV IT+N N +
Sbjct: 283 IKRKEYIAEKMIAVIEDVGPKNVVQVITDNAANCR 317
>01_06_1127 -
34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 220 KTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDPI 86
KTD +K + +IE+VE E E+ + LS V + +
Sbjct: 565 KTDGGPQSKASAAPVIEDVEPSEMSLEEIEEKLSSVVKSETISQL 609
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,066,889
Number of Sequences: 37544
Number of extensions: 126755
Number of successful extensions: 423
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -