Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0424.Seq
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.26 
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   31   0.35 
SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)                     29   1.4  
SB_19175| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-05)                 29   1.4  
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_24227| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_37796| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_42331| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-07)                 27   7.4  
SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_21581| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -1

Query: 235 DTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDPITNNHINLKPD 56
           DT    T D +SN I  S +   +E +  I    S T+     +N VDP  NN  +   +
Sbjct: 416 DTRLYTTVDSRSNPIPESDLHTTLEDQTLISDSPSRTIQHQNELNNVDPTVNNRHDTMSN 475

Query: 55  NF 50
            F
Sbjct: 476 TF 477


>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 137 FRFNSLFTFYILYNTGSFDFIRLFIVCFNFVC 232
           + + SLF F  + +   +D   LF VCFN+ C
Sbjct: 242 YAYCSLFVFITIVHASVYDLRVLFFVCFNYNC 273


>SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)
          Length = 817

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 399 EANFSVGKNE---KIDSDEQMIGIAANLQATEKDEVKTGDKESDKIETS 262
           EA+  +G +E   K+DSD+ +  I         D + TGDKE  K++++
Sbjct: 520 EADGDLGTSEVEAKVDSDDNLGTIQKEAITDNDDSMSTGDKERLKLQST 568


>SB_19175| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-05)
          Length = 431

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 143 FNSLFTFYILYNTGSFDFIRLFIVCFNFVCVFTF 244
           F+++  FY  Y +    F+ LF++C ++  +F +
Sbjct: 236 FHAISRFYFFYTSTVLTFLSLFVICVSYGLMFYY 269


>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 390 FSVGKNEKIDSDEQMIGIAANLQATEKDEVKTGDKESDKIETS 262
           F    + K D    +  + A++++  KD +KTGDK+S   +T+
Sbjct: 452 FMFQSSAKSDDSPSINDLRADIESAIKDALKTGDKKSAPKQTA 494


>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 910

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 211 DKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDPITNNHIN 68
           D+KS  I++    E + RE    PE+    + AV +N+ D +T +HI+
Sbjct: 658 DEKSTYIKSPPFFEAMTREL---PEIKGIQNAAVLLNLGDSVTTDHIS 702


>SB_24227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = -1

Query: 253 ENVKREDTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDPITNNH 74
           EN+K E+T    T    S  + +   +EN+   ++I  +L D  +D V  N+++  T N 
Sbjct: 146 ENIK-ENTQIFITSH--SPTLTSKAKLENLIVLDSIAYKLDDCFTDRVSENIIED-TKNK 201

Query: 73  INLKPDNFWINK 38
           + L  D+F   K
Sbjct: 202 VKLNEDDFITRK 213


>SB_37796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -2

Query: 357 DEQMIGIAANLQATEKDEVKTGDKESDKIETSGIERM*NVKTHTKLKQTIKSLIK 193
           ++ +IG    L    KD  +  D+   +I+T+G+    N+ +  K    I +L+K
Sbjct: 209 EKALIGATITLSLAGKDSKRCVDQREARIKTAGVAHQYNIMS-KKAMAAIDTLVK 262


>SB_42331| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-07)
          Length = 403

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +2

Query: 218 FNFVCVFTF----HILSIPEVSILSDSLSPVLTSSFSVACKLAAM 340
           FNF+ +  F    H L +P+V +LS ++S  L    ++   L A+
Sbjct: 48  FNFIVLLVFLSKRHFLQVPDVFLLSVAISDCLACVIAMPVTLLAV 92


>SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -2

Query: 387 SVGKNEKIDSDEQMIGIAANLQ----ATEKDEVKTGDK 286
           +V KNE  ++DE   G+A  L+    ATE  EVKT  K
Sbjct: 376 TVHKNEVKENDEGKSGLARQLRNTNDATESSEVKTCKK 413


>SB_21581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 238 HVSHSLNTRSFDFIRFFIACFNFVFFS 318
           H+SH   T   D+ R FI C +   FS
Sbjct: 175 HISHCFLTILIDYARSFITCAHLSLFS 201


>SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 612

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/58 (18%), Positives = 30/58 (51%)
 Frame = -1

Query: 187 TSGIIENVEREETIEPELSDTLSDAVPINVVDPITNNHINLKPDNFWINKYATDDAEL 14
           T  +   + R+  +  + S+ L + + ++ +D +TN+     P+N + +   + DA++
Sbjct: 550 TEQVTTQMMRQTQLSQQTSNNLREDLIVHAIDDVTNHVTGTTPNNLFQSGTLSIDAKV 607


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,001,552
Number of Sequences: 59808
Number of extensions: 167986
Number of successful extensions: 591
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)