Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0424.Seq
(400 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82070-4|CAB04913.2| 227|Caenorhabditis elegans Hypothetical pr... 29 1.2
U28971-5|AAA68379.1| 982|Caenorhabditis elegans Hypothetical pr... 29 1.2
AF000198-2|AAB53055.2| 748|Caenorhabditis elegans Hypothetical ... 29 1.2
U39997-8|AAA81100.1| 718|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z74043-7|CAA98539.2| 705|Caenorhabditis elegans Hypothetical pr... 27 3.7
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 27 3.7
AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine re... 27 3.7
AC006673-5|AAF39919.2| 335|Caenorhabditis elegans Serpentine re... 27 5.0
Z93391-5|CAB07686.3| 387|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 27 6.5
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z93384-4|CAE17903.1| 308|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z75547-11|CAA99905.4| 394|Caenorhabditis elegans Hypothetical p... 26 8.7
CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical ... 26 8.7
AL021492-15|CAE18000.1| 308|Caenorhabditis elegans Hypothetical... 26 8.7
>Z82070-4|CAB04913.2| 227|Caenorhabditis elegans Hypothetical
protein W04E12.4 protein.
Length = 227
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -1
Query: 253 ENVKREDTYEVKTDDKKSNKIETSGIIENVEREE-TIEPELSDTLSDAVPINVVDPITNN 77
ENVK T E ++DD + +E S I+E E ++ T P+++ ++ I +V +
Sbjct: 150 ENVKNSPTSEPESDDGTDSDLE-SEILETDEMDDVTTSPQITSSVPKFALICIVPIVLAI 208
Query: 76 HINLKPDNF 50
+ L P +F
Sbjct: 209 LLYLAPIDF 217
>U28971-5|AAA68379.1| 982|Caenorhabditis elegans Hypothetical
protein B0244.6 protein.
Length = 982
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 131 GQFRFNSLFTFYILYNTGS-FDFIRLFIVCFNFVCVFTFHILSIPEVSILSDS 286
G + + FT + ++ G+ FDFI FI+ + VFT IL +S++ S
Sbjct: 404 GVLQISHHFTICLYFSFGNLFDFIGNFIIIASVCLVFTIAILFFVFISLVRSS 456
>AF000198-2|AAB53055.2| 748|Caenorhabditis elegans Hypothetical
protein T28F2.4a protein.
Length = 748
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -2
Query: 378 KNEKIDSD-EQMIGIAANLQATEKDEVKTGDKESDKIETSGIERM*NVKT 232
K E ++SD EQMIG+ ++ + ++DE D++ I+ IER N ++
Sbjct: 159 KTEVVESDDEQMIGLDSDEELEDEDETDI-DEDEMMIDPKDIERYINFES 207
>U39997-8|AAA81100.1| 718|Caenorhabditis elegans Hypothetical
protein F56D1.2 protein.
Length = 718
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 118 DAVPINVVDPITNNHINLKPDNFWINKYATD 26
D P +VDP TN I K D FW + D
Sbjct: 225 DMFPEILVDPTTNQSIITKTDPFWAPMLSAD 255
>Z74043-7|CAA98539.2| 705|Caenorhabditis elegans Hypothetical
protein T19B10.5 protein.
Length = 705
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -1
Query: 226 EVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDPITNNHINLKPDNFW 47
E+K DD K +I + I +R ++I+ + + ++P +V +H K DN W
Sbjct: 563 EIKEDDSKGPEITEARISRIPKRSDSIKTPVIERKLPSLPKSVTQ---RSHSADKNDNVW 619
Query: 46 INKY 35
Y
Sbjct: 620 SRLY 623
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -1
Query: 184 SGII-ENVEREETIEPELSDTLSDAVPIN 101
SG+I +N EREETI+ EL+D + +N
Sbjct: 404 SGLIADNKEREETIQKELADVEREDEKLN 432
>AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine
receptor, class i protein77 protein.
Length = 324
Score = 27.5 bits (58), Expect = 3.7
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 137 FRFNSLFTFYILYNTGSFDFIRLFIVCFNFVCVFT 241
F NS+ +++++NT + +++ F CV T
Sbjct: 24 FILNSIGIYFLIFNTNRLGNFKYYLLLFQLSCVLT 58
>AC006673-5|AAF39919.2| 335|Caenorhabditis elegans Serpentine
receptor, class h protein8 protein.
Length = 335
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 203 LFIVCFNFVCVFTFHILSIPEV 268
+F +C FVC+FT ILS P++
Sbjct: 139 MFFICVVFVCIFT--ILSYPDL 158
>Z93391-5|CAB07686.3| 387|Caenorhabditis elegans Hypothetical
protein W04G5.6 protein.
Length = 387
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 193 IETSGIIENVEREETIEPELSDTLSDAVPINVVDPITNNHINLKPDNFWIN 41
+ TS ++ ++ EE P S T D V + + NH+ + P N I+
Sbjct: 30 VPTSNLVNLIDLEE---PSSSLTPFDQVKAKIESLVNENHLEIDPKNLTIS 77
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 248 ILSIPEVSILSDSLSPVLTSSFSVACKLAAMP 343
+LS+P ++L + L +T +F+ AC A P
Sbjct: 881 VLSLPTYNVLLEILVEQMTPTFTYACHQPAQP 912
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 248 ILSIPEVSILSDSLSPVLTSSFSVACKLAAMP 343
+LS+P ++L + L +T +F+ AC A P
Sbjct: 881 VLSLPTYNVLLEILVEQMTPTFTYACHQPAQP 912
>Z93384-4|CAE17903.1| 308|Caenorhabditis elegans Hypothetical
protein Y45F10D.15 protein.
Length = 308
Score = 26.2 bits (55), Expect = 8.7
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Frame = +2
Query: 23 IISCVFVYPEIIGFKVYMVVSDRVYNINRNSVR*CI-----GQFRFNSLFTFYILYNTGS 187
+ SC++ P +I VY+V+ V NI + S++ C G S F FY L S
Sbjct: 160 VFSCIYAIPTVIFLPVYVVI-HFVANI-KGSLK-CFRRKKEGDENDFSYFYFYALQFFTS 216
Query: 188 FDFIRLFIVCFNFVCVFTFHILSIPEVSILSDSLSPVLTSSFSVACKLAAMP 343
+ + F V F+ F + + I +S VL F V+ AA P
Sbjct: 217 WAHVYQFCVVQTFLIPAIFPAFA-GDYLITFRYVSGVLAVRFMVSIIFAAGP 267
>Z75547-11|CAA99905.4| 394|Caenorhabditis elegans Hypothetical
protein R11D1.10a protein.
Length = 394
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = -1
Query: 265 FWY*ENVKREDTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDP 89
FW N K + D+K ++ I+ E E + P+ S++ + P N P
Sbjct: 320 FWDRRNEKLSVDEDEDEDEKSLDEETFKKILHEAENSEDLPPQTSESNKASTPSNSSSP 378
>CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical
protein C42C1.7 protein.
Length = 710
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 226 EVKTDDKKSNKIETSGIIENVEREETIEPEL 134
E DD K +E G E+ E EET+E ++
Sbjct: 232 EKPNDDGKLKLLEEDGFDESEEEEETVETKV 262
>AL021492-15|CAE18000.1| 308|Caenorhabditis elegans Hypothetical
protein Y45F10D.15 protein.
Length = 308
Score = 26.2 bits (55), Expect = 8.7
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Frame = +2
Query: 23 IISCVFVYPEIIGFKVYMVVSDRVYNINRNSVR*CI-----GQFRFNSLFTFYILYNTGS 187
+ SC++ P +I VY+V+ V NI + S++ C G S F FY L S
Sbjct: 160 VFSCIYAIPTVIFLPVYVVI-HFVANI-KGSLK-CFRRKKEGDENDFSYFYFYALQFFTS 216
Query: 188 FDFIRLFIVCFNFVCVFTFHILSIPEVSILSDSLSPVLTSSFSVACKLAAMP 343
+ + F V F+ F + + I +S VL F V+ AA P
Sbjct: 217 WAHVYQFCVVQTFLIPAIFPAFA-GDYLITFRYVSGVLAVRFMVSIIFAAGP 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,791,168
Number of Sequences: 27780
Number of extensions: 140215
Number of successful extensions: 656
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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