Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0423.Seq
         (387 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   5.6  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   5.6  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   5.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   7.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   7.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   7.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   7.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    20   7.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   9.8  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -3

Query: 94  YCILRMYVLSTRLIAYHFKFEIHIFFKLNVI 2
           Y +LR+   +     +H  F  HI   +N++
Sbjct: 654 YVVLRLRANNPGFWLFHCHFLFHIVIGMNLV 684


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 360 FSVSQXAFWSIXQFLT*IFYGLSFTIXIK*FAI 262
           F  S   FWS   +++ IF  +      K FAI
Sbjct: 118 FVASNCFFWSYQSYMSYIFANIMGLEFYKQFAI 150


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 360 FSVSQXAFWSIXQFLT*IFYGLSFTIXIK*FAI 262
           F  S   FWS   +++ IF  +      K FAI
Sbjct: 118 FVASNCFFWSYQSYMSYIFANIMGLEFYKQFAI 150


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 46  HFKFEIHIFF 17
           +++FE HIFF
Sbjct: 608 YYEFETHIFF 617


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 46  HFKFEIHIFF 17
           +++FE HIFF
Sbjct: 608 YYEFETHIFF 617


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 46  HFKFEIHIFF 17
           +++FE HIFF
Sbjct: 608 YYEFETHIFF 617


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 46  HFKFEIHIFF 17
           +++FE HIFF
Sbjct: 608 YYEFETHIFF 617


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 223 VRIYHCICKL 194
           V  YHC CKL
Sbjct: 319 VNDYHCNCKL 328



 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = -2

Query: 146 KASFSIISXCVXIGITMILYIAHVCS 69
           K +F   S C   G+   ++  H C+
Sbjct: 338 KVNFCATSPCQNGGVCTTIHAGHKCT 363


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 339 FWSIXQFLT*IF 304
           FWS   FLT IF
Sbjct: 232 FWSALYFLTIIF 243


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,212
Number of Sequences: 336
Number of extensions: 863
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8119573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)