Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0423.Seq
         (387 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   2.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   2.8  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   4.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   4.9  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -1

Query: 111 DWNYHDIVYC 82
           +W+Y+D+ YC
Sbjct: 108 NWSYNDVKYC 117


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 84  NIQYHGNSNXNTXRDNRKTS 143
           NIQ   N N N  ++N+K +
Sbjct: 422 NIQNTNNQNDNNQKNNKKNA 441


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 212 INSDVAXCLITCEVAV*MANHLXLMVKD 295
           INS      I  EV V  AN   +++KD
Sbjct: 23  INSKKTIMRILKEVCVLQANRACILIKD 50


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 212 INSDVAXCLITCEVAV*MANHLXLMVKD 295
           INS      I  EV V  AN   +++KD
Sbjct: 6   INSKKTIMRILKEVCVLQANRACILIKD 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,525
Number of Sequences: 438
Number of extensions: 1026
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)