Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0422.Seq
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   4e-04
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   7e-04
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.037
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.037
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 32   0.20 
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 32   0.20 
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.2  
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)                27   7.4  
SB_57268| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)                   26   9.8  
SB_42682| Best HMM Match : OmpA (HMM E-Value=0.72)                     26   9.8  
SB_9062| Best HMM Match : SAP (HMM E-Value=0.8)                        26   9.8  
SB_47155| Best HMM Match : PHD (HMM E-Value=1.5)                       26   9.8  
SB_29348| Best HMM Match : PHD (HMM E-Value=1.5)                       26   9.8  
SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_16760| Best HMM Match : OmpA (HMM E-Value=0.72)                     26   9.8  
SB_13321| Best HMM Match : PHD (HMM E-Value=1.5)                       26   9.8  

>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 20/27 (74%), Positives = 20/27 (74%)
 Frame = +2

Query: 2   PVVICLSQRLSHACLSASRIKAIPRMA 82
           PVVICLSQRLSHACLS S      RMA
Sbjct: 135 PVVICLSQRLSHACLSISTCTVKLRMA 161


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 20/27 (74%), Positives = 20/27 (74%)
 Frame = +2

Query: 2   PVVICLSQRLSHACLSASRIKAIPRMA 82
           PVVICLSQRLSHACLS S      RMA
Sbjct: 111 PVVICLSQRLSHACLSISTRTVKLRMA 137


>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 34.3 bits (75), Expect = 0.037
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 398 APSPESNPDSPLPVTTM 348
           APSPESNP+SP PV TM
Sbjct: 112 APSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 34.3 bits (75), Expect = 0.037
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 398 APSPESNPDSPLPVTTM 348
           APSPESNP+SP PV TM
Sbjct: 56  APSPESNPNSPSPVVTM 72


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 9    LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
            L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 866  LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -1

Query: 400 RLPLRNRTLIPRYP 359
           RLPLRNRTLI R+P
Sbjct: 227 RLPLRNRTLILRHP 240


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 228  RPKSLILMNWITFADRMVKYRRRIFQM 308
            R +  +   W TF DR +KY R +F++
Sbjct: 1005 RKEGAMKKRWFTFKDRQLKYYRGVFKV 1031


>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 67  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG 183
           D  NG+I  F    +    W   + LE IH + TL  DG
Sbjct: 263 DFGNGTISSFTGNITRFNVWTLYISLEFIHNMATLVEDG 301


>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
          Length = 420

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 28  IKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIR-TLTSDGMSAFIRS 204
           +KPC S   P      + +++        +VT+   V  + IH  R TL+SD M A   S
Sbjct: 35  LKPCSSNYAP---SEQSYNVFLAPLYTRATVTYKGPVQSQGIHLNRYTLSSDNMKANNIS 91

Query: 205 KPIDG 219
           +P+DG
Sbjct: 92  RPLDG 96


>SB_57268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 912

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  CL D A+ ++ +    +Y   +N+ +LV    L ++  CG+S
Sbjct: 512 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 556


>SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)
          Length = 1205

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  CL D A+ ++ +    +Y   +N+ +LV    L ++  CG+S
Sbjct: 437 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 481


>SB_42682| Best HMM Match : OmpA (HMM E-Value=0.72)
          Length = 296

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  CL D A+ ++ +    +Y   +N+ +LV    L ++  CG+S
Sbjct: 221 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 265


>SB_9062| Best HMM Match : SAP (HMM E-Value=0.8)
          Length = 293

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  CL D A+ ++ +    +Y   +N+ +LV    L ++  CG+S
Sbjct: 107 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 151


>SB_47155| Best HMM Match : PHD (HMM E-Value=1.5)
          Length = 285

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  CL D A+ ++ +    +Y   +N+ +LV    L ++  CG+S
Sbjct: 107 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 151


>SB_29348| Best HMM Match : PHD (HMM E-Value=1.5)
          Length = 212

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  CL D A+ ++ +    +Y   +N+ +LV    L ++  CG+S
Sbjct: 32  LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 76


>SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  CL D A+ ++ +    +Y   +N+ +LV    L ++  CG+S
Sbjct: 84  LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 128


>SB_16760| Best HMM Match : OmpA (HMM E-Value=0.72)
          Length = 933

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  CL D A+ ++ +    +Y   +N+ +LV    L ++  CG+S
Sbjct: 519 LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 563


>SB_13321| Best HMM Match : PHD (HMM E-Value=1.5)
          Length = 249

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  CL D A+ ++ +    +Y   +N+ +LV    L ++  CG+S
Sbjct: 84  LMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKCGSS 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,356,895
Number of Sequences: 59808
Number of extensions: 231148
Number of successful extensions: 569
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)