Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0422.Seq
         (400 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC109121-1|AAI09122.1|  711|Homo sapiens F-box protein 34 protein.     28   9.9  
BC109120-1|AAI09121.1|  711|Homo sapiens F-box protein 34 protein.     28   9.9  
BC095482-1|AAH95482.2|  711|Homo sapiens F-box protein 34 protein.     28   9.9  

>BC109121-1|AAI09122.1|  711|Homo sapiens F-box protein 34 protein.
          Length = 711

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 129 NCGNSRANTCNQNSDQ*WD 185
           +CG SRA+ C+   DQ WD
Sbjct: 349 DCGPSRADRCSPKEDQAWD 367


>BC109120-1|AAI09121.1|  711|Homo sapiens F-box protein 34 protein.
          Length = 711

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 129 NCGNSRANTCNQNSDQ*WD 185
           +CG SRA+ C+   DQ WD
Sbjct: 349 DCGPSRADRCSPKEDQAWD 367


>BC095482-1|AAH95482.2|  711|Homo sapiens F-box protein 34 protein.
          Length = 711

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 129 NCGNSRANTCNQNSDQ*WD 185
           +CG SRA+ C+   DQ WD
Sbjct: 349 DCGPSRADRCSPKEDQAWD 367


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,873,790
Number of Sequences: 237096
Number of extensions: 1078681
Number of successful extensions: 1982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1982
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)