Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0419.Seq
         (359 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7J7L2 Cluster: Putative uncharacterized protein n508L;...    31   4.6  
UniRef50_A0DE76 Cluster: Chromosome undetermined scaffold_47, wh...    31   4.6  
UniRef50_Q22172 Cluster: Putative uncharacterized protein; n=1; ...    31   8.0  

>UniRef50_A7J7L2 Cluster: Putative uncharacterized protein n508L;
           n=2; Paramecium bursaria Chlorella virus A1|Rep:
           Putative uncharacterized protein n508L - Chlorella virus
           FR483
          Length = 102

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
 Frame = +2

Query: 116 CIHKLKTTQSHKVMQGLLK---LMFPFV-IPRSYHH--GSRCRCLRNC 241
           C H+L +   H+   GLL+   L  P   +P S+H   GSR RC+ NC
Sbjct: 53  CKHELSSAPQHRRTDGLLRWRDLCLPDPRLPGSWHSWPGSRWRCICNC 100


>UniRef50_A0DE76 Cluster: Chromosome undetermined scaffold_47, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_47,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 253

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 113 KCIH-KLKTTQSHKVMQGLLKLMFPFVIPRSYHHGSRCRCLRNCF 244
           KC+  K+K  ++H   Q L++ ++ FVI ++Y++      ++ CF
Sbjct: 201 KCLEMKVKLPKNHPAQQILVQDLYSFVISKNYNNEQAVNFIKKCF 245


>UniRef50_Q22172 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 601

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 137 TQSHKVMQGLLKLMFPFVIPRSYHHGSRCRCLRNCFGLLQNXXXXXXXFRSCRIPHC 307
           ++ HK+ + L   +FPF IPRSY    +   L+ CF  LQ            R  +C
Sbjct: 514 SRCHKITKDLSNSLFPFCIPRSYLCQHKMFTLK-CFFSLQTFCIKLTYLNLTRKKNC 569


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,377,694
Number of Sequences: 1657284
Number of extensions: 4208698
Number of successful extensions: 8303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8298
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12367962079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)