Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0419.Seq
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   2.7  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    25   4.7  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   4.7  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   8.2  

>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 48  ILTSYKLLKMSQPNEERPSQFLNAFTNL 131
           ++  +KLLK    N   PSQ  ++FTNL
Sbjct: 822 LIAVHKLLKRVSINAVDPSQTTSSFTNL 849


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 116 CIHKLKTTQSHKVMQGLLKLMFPFVIPRSYHH 211
           C HK+K  Q H++      L+F F      HH
Sbjct: 348 CFHKIKAAQWHQISP--RSLLFQFQEQNHIHH 377


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 359 KKRAQQSNRVVEKSTDGDN 303
           KK  +QSN+ +   TDGDN
Sbjct: 385 KKTDEQSNKKLLNETDGDN 403


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 95  TAITIFKCIHKLKTTQSHKVMQGLLKLMFPFVIPRSYHHGSR 220
           TAI + + +   + TQ H +   +++L  P+++     H  R
Sbjct: 324 TAILLQEKLASSRFTQLHYISASMIRLSMPYILCELADHPER 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,164,405
Number of Sequences: 5004
Number of extensions: 17838
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)