Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0419.Seq
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0143 - 1125211-1126414,1129217-1129368                           27   4.4  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    27   4.4  
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194...    27   5.9  
08_01_0006 + 52469-52719,52805-52904,53285-53350,53688-53747,540...    26   7.7  
02_01_0708 - 5298456-5298664,5299615-5299768,5300209-5300301,530...    26   7.7  

>08_01_0143 - 1125211-1126414,1129217-1129368
          Length = 451

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 77  ESTKRGTAITIFKCIHKLKTTQSHKVMQGLLKLMFPFVIPR-----SYHHGSR 220
           EST+      +  CI+K+   +   ++Q L    + + +P       YHHG+R
Sbjct: 30  ESTETALGAEVHLCINKIMIHRYPAILQNLKMDYYRYFVPSVVAIGPYHHGAR 82


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 140  QSHKVMQGLLKLMFPFVIPRSYHHGSRC 223
            +S  ++Q L KLM PF  P  Y   S C
Sbjct: 1861 KSKVIVQRLSKLMEPFAFPSDYSRTSSC 1888


>02_05_0007 +
           24918163-24918420,24919360-24919410,24919411-24919480,
           24919645-24919830,24920127-24920275,24921310-24921417,
           24921501-24921638,24922574-24922853,24922924-24923047,
           24923197-24923312,24923612-24923619
          Length = 495

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = +3

Query: 33  YTRRLILTSYKLLK----MSQPNEERPSQFLNAFTNLKL 137
           Y+R+L+     ++K    ++ PN+ RP++F   +T LK+
Sbjct: 80  YSRKLLEADGFIVKHITLLANPNQVRPTRFWGVYTKLKI 118


>08_01_0006 +
           52469-52719,52805-52904,53285-53350,53688-53747,
           54029-54202,54932-54993,55934-56030,56487-56510
          Length = 277

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 247 SEAVPQAPTPAPMMIAP 197
           S ++P  PTPA M++AP
Sbjct: 34  SSSIPPPPTPATMLLAP 50


>02_01_0708 -
           5298456-5298664,5299615-5299768,5300209-5300301,
           5300644-5300847,5302034-5302174,5302723-5302827,
           5303485-5303874,5304573-5304713,5304756-5304845,
           5305779-5306288
          Length = 678

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 241 AVPQAPTPAPMMIAPRNXEWEHQL 170
           A   +P+P P+++ PR   +EH L
Sbjct: 22  AASPSPSPPPLLLRPRREAFEHGL 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,443,654
Number of Sequences: 37544
Number of extensions: 117575
Number of successful extensions: 237
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)