Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0419.Seq
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    31   0.32 
Z68118-2|CAA92188.2|  165|Caenorhabditis elegans Hypothetical pr...    30   0.56 

>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 137 TQSHKVMQGLLKLMFPFVIPRSYHHGSRCRCLRNCFGLLQNXXXXXXXFRSCRIPHC 307
           ++ HK+ + L   +FPF IPRSY    +   L+ CF  LQ            R  +C
Sbjct: 514 SRCHKITKDLSNSLFPFCIPRSYLCQHKMFTLK-CFFSLQTFCIKLTYLNLTRKKNC 569


>Z68118-2|CAA92188.2|  165|Caenorhabditis elegans Hypothetical
           protein R01E6.2 protein.
          Length = 165

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 167 LKLMFPFVIPRSYHHGSRCRCL 232
           L L+FPFV+P +Y++G+   C+
Sbjct: 8   LALLFPFVLPFNYNNGASAACI 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,615,101
Number of Sequences: 27780
Number of extensions: 109297
Number of successful extensions: 245
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)