Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0418.Seq
         (403 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8ILC5 Cluster: Putative uncharacterized protein; n=2; ...    31   6.4  
UniRef50_O96208 Cluster: Putative uncharacterized protein PFB057...    31   8.5  

>UniRef50_Q8ILC5 Cluster: Putative uncharacterized protein; n=2;
            cellular organisms|Rep: Putative uncharacterized protein
            - Plasmodium falciparum (isolate 3D7)
          Length = 2700

 Score = 31.5 bits (68), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 140  LFYSIINSFRRARDVKNIFG*FFYTLGYII 229
            +   I+N+F + ++ KN+ G  FY  GYI+
Sbjct: 2239 MLIEILNNFEKIKNYKNLLGIIFYLCGYIL 2268


>UniRef50_O96208 Cluster: Putative uncharacterized protein PFB0575c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFB0575c - Plasmodium falciparum
           (isolate 3D7)
          Length = 447

 Score = 31.1 bits (67), Expect = 8.5
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 3   KFQRYLTVVLLF*IKEHLLRHNYNS*TYAVATLFVNNNVFYKVLXHYFILSSIVFAGH 176
           KF   +  V+LF    H   H Y    Y++   FV+  +FYK +  YF L + +F G+
Sbjct: 291 KFSSVMEKVILF--MPHCDIHLYGDILYSI---FVHEKLFYKNVQFYFNLENTIFLGN 343


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,808,194
Number of Sequences: 1657284
Number of extensions: 5661371
Number of successful extensions: 8677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8677
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17349842203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)