Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0418.Seq
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_40824| Best HMM Match : His_leader (HMM E-Value=3.1)                26   10.0 
SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 

>SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 201 YPKIFFTSRALRKLLMIE*NNVLRLCRTHYYLQKASRQHMSN 76
           YP IF    A+  L+ ++  + L     H++L+   R H ++
Sbjct: 855 YPSIFIIIIAIISLIFMKATHFLNYSLLHFFLEVGQRSHSAS 896


>SB_40824| Best HMM Match : His_leader (HMM E-Value=3.1)
          Length = 456

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 211 HFGLHYWSFSKDP*FLSKNXIAYVTRE*CSFKT 309
           HFG H W  SK     ++N + + T +  S+ T
Sbjct: 57  HFGTHTWLVSKPGGIFTQNTLQWSTTQIASYLT 89


>SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 244 PY*NSNNVTQSVKKLPKNILYIACPAKTID 155
           P+   N+   S+  LP + LYI CP + ++
Sbjct: 178 PFGTENDTVYSMNVLPMSKLYIICPNQVLN 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,374,961
Number of Sequences: 59808
Number of extensions: 171429
Number of successful extensions: 268
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)