Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0418.Seq
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U13645-7|AAA20989.2|  598|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical
           protein T24D8.1 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 178 RCKEYFWVIFLHFGLHYWSF 237
           RC+  F +IFL F + YWSF
Sbjct: 470 RCRIVFPMIFLLFNVAYWSF 489


>U13645-7|AAA20989.2|  598|Caenorhabditis elegans Hypothetical
           protein C05D10.3 protein.
          Length = 598

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 81  TYAVATLFVNNNVFYKVLXHYFILSSIVFAGHAM*RIFLGNFFTLWVTLLEF 236
           +YAVAT+F N +V   +L   F++  + F G  +    + ++F  W++ L +
Sbjct: 466 SYAVATIFANTDVAMTILP-IFVVPIMAFGGFFITFDAIPSYFK-WLSSLSY 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,145,357
Number of Sequences: 27780
Number of extensions: 145281
Number of successful extensions: 243
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)