Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0417.Seq
(405 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 153 1e-36
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 92 3e-18
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 69 3e-11
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 69 5e-11
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 65 6e-10
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 59 3e-08
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 59 3e-08
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 53 2e-06
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 52 6e-06
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 47 2e-04
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 46 3e-04
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 44 9e-04
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 43 0.002
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 41 0.008
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 40 0.025
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 40 0.025
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 39 0.033
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 39 0.043
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.076
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 38 0.10
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 37 0.13
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 37 0.13
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 36 0.23
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 36 0.23
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 36 0.23
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 36 0.41
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.41
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 35 0.54
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 35 0.54
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 35 0.54
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 35 0.54
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 35 0.71
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 35 0.71
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 35 0.71
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 0.94
UniRef50_A2DX13 Cluster: PIKK family atypical protein kinase; n=... 34 0.94
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 34 1.2
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 34 1.2
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 34 1.2
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 33 1.6
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 33 1.6
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 33 2.2
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 33 2.2
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 33 2.2
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 33 2.9
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 33 2.9
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 32 3.8
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 32 5.0
UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, wh... 31 6.6
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 31 6.6
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 31 6.6
UniRef50_A2WZF3 Cluster: DNA-directed RNA polymerase; n=1; Oryza... 31 8.7
UniRef50_Q6ZUN4 Cluster: CDNA FLJ43520 fis, clone PLACE5000001; ... 31 8.7
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 153 bits (371), Expect = 1e-36
Identities = 73/84 (86%), Positives = 78/84 (92%), Gaps = 1/84 (1%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRP 75
QTQVFK GLAKSIHHAR+LIRQRHIRVRKQVVNIPSFIVRLDS KHIDFSL+SP+G GRP
Sbjct: 111 QTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRP 170
Query: 74 GRVKRKNLRKGQGG-GAANDEEED 6
GRVKRKN +KGQGG GA +DEEED
Sbjct: 171 GRVKRKNAKKGQGGAGAGDDEEED 194
Score = 96.7 bits (230), Expect = 2e-19
Identities = 46/57 (80%), Positives = 52/57 (91%)
Frame = -3
Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLRRRCSKL 233
LTL+EKDP+RLFEGNAL RRLVRIGVLDE +MKLDY+LGLKIEDFLERRL+ + KL
Sbjct: 61 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKL 117
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 92.3 bits (219), Expect = 3e-18
Identities = 49/84 (58%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRP 75
QTQVF+ L KSI HA +L+ HIR+ KQVV+I F V LDS KH DF G G P
Sbjct: 116 QTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSRKHTDFFRHCLNGGGYP 175
Query: 74 GRVKRKNLRKGQGG-GAANDEEED 6
G VKRKN++KG+GG GA +DEEED
Sbjct: 176 GSVKRKNVKKGRGGAGAGDDEEED 199
Score = 40.7 bits (91), Expect = 0.011
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Frame = -3
Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMK------LDYVLGLKIEDFLERRLRRRC 242
L L EKDP+ LFE N L R+LV G+L E +MK + GL+I F E++L+ +
Sbjct: 61 LLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFTSWAFGLRIY-FSEKQLQTQV 119
Query: 241 SKL 233
+L
Sbjct: 120 FEL 122
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 69.3 bits (162), Expect = 3e-11
Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 93
LL QT V++ G AKSIHHAR+LIR + I+V KQVV++PSF+VR++S I + +P
Sbjct: 104 LLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTP 163
Query: 92 FGXGR-PGRVKRKNLRKGQ 39
GR KRKN G+
Sbjct: 164 LTNPEINGRRKRKNNHAGK 182
Score = 58.4 bits (135), Expect = 5e-08
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = -3
Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
L + KDPKRL EG AL RRL +G+L Q KL++VL LK E+ LERRL+
Sbjct: 60 LMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQ 110
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 68.5 bits (160), Expect = 5e-11
Identities = 34/56 (60%), Positives = 39/56 (69%)
Frame = -2
Query: 176 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRPGRVKRKNLRKGQGGGAANDEEE 9
V +Q+VNIPSFIVRL+S KHI FSL SP G RVKRKN + GGG +EEE
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGGGGDGEEEEE 82
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 64.9 bits (151), Expect = 6e-10
Identities = 30/51 (58%), Positives = 40/51 (78%)
Frame = -3
Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
LTL+EK+P+R+FEG AL R + R G+L E Q KLDYVL L +E+FL+ RL+
Sbjct: 51 LTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQ 101
Score = 38.3 bits (85), Expect = 0.057
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHI 180
QT VFK G KSIHH +LIRQ HI
Sbjct: 101 QTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 59.3 bits (137), Expect = 3e-08
Identities = 30/59 (50%), Positives = 40/59 (67%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 96
+L QT V + L+K+IH ARILI +HI+V+ Q+VN PSF+VR D+ I FSL S
Sbjct: 106 ILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDNEIFISFSLNS 164
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 59.3 bits (137), Expect = 3e-08
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 87
Q +VF AGLAKS+HHAR+LI R I ++ Q+V++P F+VR D I+++ S +G
Sbjct: 115 QFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 52.8 bits (121), Expect = 2e-06
Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Frame = -2
Query: 152 PSFIVRLDSGKHIDFSLKSPFGXGRPGRVKRKNLR---KGQGGGA 27
PSF+VR+DS K D SL SP G GRPGRVK+K+L+ K GGA
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLKVAAKEAAGGA 68
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 51.6 bits (118), Expect = 6e-06
Identities = 29/73 (39%), Positives = 44/73 (60%)
Frame = +3
Query: 12 LFIIGGSATLSLAEVLPLDTSRTTXTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPL 191
LF + T S + + T +T TEWR EVNVL R Q+ ++ WDV +LL ++N+ L
Sbjct: 3 LFFVSFFTTSSSSSLSGHSTWSST-TEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSL 61
Query: 192 PDQNSGMMDGLRQ 230
DQ+S +++ L Q
Sbjct: 62 GDQDSSVVNRLGQ 74
Score = 49.2 bits (112), Expect = 3e-05
Identities = 22/50 (44%), Positives = 37/50 (74%)
Frame = +2
Query: 254 ETTLQEVLNLQTKHIIEFHLFFIQYSNTNQTTXKGITFEQSLGVLLLEGE 403
+++ QE+ NLQ++ II+ L F Q +N++Q++ + ITFEQSL VL + G+
Sbjct: 83 QSSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSGQ 132
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 46.8 bits (106), Expect = 2e-04
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG-XGR 78
QT VF+ GLA++ AR LI HI V +VV PS++V ++ I ++ SPF
Sbjct: 108 QTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNH 167
Query: 77 PGRVK 63
P R K
Sbjct: 168 PERAK 172
Score = 31.1 bits (67), Expect = 8.7
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -3
Query: 367 EGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
E L L + G+L + LD VL L +ED LERRL+
Sbjct: 70 EAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQ 108
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 46.0 bits (104), Expect = 3e-04
Identities = 27/54 (50%), Positives = 30/54 (55%)
Frame = +1
Query: 91 NGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFARPALNTCV 252
+G+ KSMC S RT G FT CL TRI RIK A D ARP+L T V
Sbjct: 58 SGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKTSV 111
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 44.4 bits (100), Expect = 9e-04
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRP 75
QT V+K GLA++I+ AR LI HI + + V P +IV IDF SPF P
Sbjct: 107 QTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPP 166
Query: 74 GRVKRKNLRK 45
+ +N+++
Sbjct: 167 TQQGEENVQQ 176
Score = 36.3 bits (80), Expect = 0.23
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = -3
Query: 355 LXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
L ++L R+G++++ LD +LGL E++LERRL+
Sbjct: 73 LIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQ 107
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 43.2 bits (97), Expect = 0.002
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 138
QT V++ GLAKSIHHAR LI H+ V + V P F+V
Sbjct: 109 QTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 41.1 bits (92), Expect = 0.008
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 93
QT + + GLAK++ AR I HI V +VV+ PS++V+ + I+F SP
Sbjct: 105 QTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 39.5 bits (88), Expect = 0.025
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = -2
Query: 191 QRHIRVRKQVVNIPSFI-----VRLDSGKHIDFSLKSPFGXGRPGRVKRKNLRKGQGGGA 27
+R R R+ + IP + VR++ K IDFS G GRPGRVKRK L+ A
Sbjct: 130 ERRYRGRRAFLVIPRVMGAPLSVRVEPQKLIDFSNTCLLGGGRPGRVKRKGLKVAAKKVA 189
Query: 26 ANDEE 12
D++
Sbjct: 190 GEDDD 194
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 39.5 bits (88), Expect = 0.025
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 96
VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I +S
Sbjct: 100 VFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEITIKPES 147
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 39.1 bits (87), Expect = 0.033
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 93
QTQV + GLA+++ AR I HI + + IP +V + HI + SP
Sbjct: 115 QTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 38.7 bits (86), Expect = 0.043
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
+++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 139 IYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 37.9 bits (84), Expect = 0.076
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -2
Query: 134 LDSGKHIDFSLKSPFGXGRPGRVKRKNLR---KGQGGGA 27
+DS KH DFSL SP G R +VKRK L+ K GGA
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLKVAAKKAAGGA 39
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 37.5 bits (83), Expect = 0.10
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 93
QT VF+ GLA + AR I HI V + +N PS++V L I + SP
Sbjct: 107 QTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPNSP 160
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 37.1 bits (82), Expect = 0.13
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 99 VYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 37.1 bits (82), Expect = 0.13
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = -3
Query: 364 GNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
G RL RIG+L E++ +LD VL L++ D LERRL+
Sbjct: 67 GEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQ 103
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 36.3 bits (80), Expect = 0.23
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
+F+ GLA++ AR ++ +H+ V + VNIPS++V+
Sbjct: 77 IFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVK 113
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 36.3 bits (80), Expect = 0.23
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 138
QT VFK GLA++I AR LI I V + V+IP ++V
Sbjct: 104 QTVVFKKGLARTIKQARQLITHGFIAVNMKRVSIPGYMV 142
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 36.3 bits (80), Expect = 0.23
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 96
+L + V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 85 ILESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 35.5 bits (78), Expect = 0.41
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -3
Query: 322 DEKQMKLDYVLGLKIEDFLERRLR 251
D ++ KLDYVL L +E+FLERRL+
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQ 40
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 35.5 bits (78), Expect = 0.41
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
VF+ +A +I AR LI HIRV + VNIPS++ +
Sbjct: 116 VFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMCK 152
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 35.1 bits (77), Expect = 0.54
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
LL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 82 LLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 35.1 bits (77), Expect = 0.54
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 108
Q+ VFK GL+ + AR+ + HI + + +N P +V ++IDF
Sbjct: 106 QSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 35.1 bits (77), Expect = 0.54
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 138
LL VF+AG A S AR ++R +HI + + V+IPS+ V
Sbjct: 96 LLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSYQV 140
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 35.1 bits (77), Expect = 0.54
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 99 VYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 34.7 bits (76), Expect = 0.71
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
LL A V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 89 LLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 34.7 bits (76), Expect = 0.71
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 155 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASETTLQE 271
CS L H +FWH GW+SP Q TPA+ ++ E
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAESVGE 126
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 34.7 bits (76), Expect = 0.71
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 96
V++ G + S AR L+ H+ V + VNIPSF+V G I+F KS
Sbjct: 99 VYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQIEFRQKS 146
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 0.94
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 228 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 133
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_A2DX13 Cluster: PIKK family atypical protein kinase; n=1;
Trichomonas vaginalis G3|Rep: PIKK family atypical
protein kinase - Trichomonas vaginalis G3
Length = 2006
Score = 34.3 bits (75), Expect = 0.94
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 316 KQMKLDYVLGLKIEDFLERRLRRRCSKLAWRSPSIMPEF*SGKGI 182
K++KLDY++ + D +E ++ ++C KL + P F GI
Sbjct: 886 KEIKLDYLMKRDLPDHIETKISQKCQKLRKSYSKVFPNFNDFSGI 930
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 33.9 bits (74), Expect = 1.2
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
+F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 81 LFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 33.9 bits (74), Expect = 1.2
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
LL + + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 90 LLESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 33.9 bits (74), Expect = 1.2
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 108
LL + + V +AGLA SI AR +R ++ V + +IPSF R+ G + F
Sbjct: 95 LLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVRF 147
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 33.5 bits (73), Expect = 1.6
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
+F G+A +I AR L+ RHI V +V+IPS+
Sbjct: 62 LFHLGMASTIPAARQLVNHRHILVNNCIVDIPSY 95
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 33.5 bits (73), Expect = 1.6
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = -3
Query: 388 KDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
+D + + + ++L +G+L E KL+ VL LK++D +ERRL+
Sbjct: 69 EDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQ 113
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 33.1 bits (72), Expect = 2.2
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
LL A V++ G A + AR L+ HIR+ + NIPS+ VR
Sbjct: 93 LLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYSVR 138
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 33.1 bits (72), Expect = 2.2
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 141
+F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 216 LFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 33.1 bits (72), Expect = 2.2
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 96
V++ G A + AR L+ H+ V + VNIPS++V + G I+ KS
Sbjct: 104 VYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIEIKEKS 151
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 32.7 bits (71), Expect = 2.9
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -2
Query: 266 GASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 120
G + TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 153 GTARLTQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 32.7 bits (71), Expect = 2.9
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
+F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 95 LFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 32.3 bits (70), Expect = 3.8
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
+L A V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 95 ILEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 31.9 bits (69), Expect = 5.0
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 138
+F+ G AKSI+ AR LI I + +V PSFI+
Sbjct: 91 IFRLGFAKSINQARQLITHGFIFINSILVKKPSFIL 126
>UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, whole
genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_25, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 1517
Score = 31.5 bits (68), Expect = 6.6
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -3
Query: 367 EGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 254
+GN+ L+RIG+LDE+ + + + + +ED + +L
Sbjct: 930 KGNSRQANLIRIGLLDEENIHSEIIKKVSLEDLAQHKL 967
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 31.5 bits (68), Expect = 6.6
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 98 VFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 31.5 bits (68), Expect = 6.6
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 96
V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I KS
Sbjct: 99 VYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEISLRDKS 146
>UniRef50_A2WZF3 Cluster: DNA-directed RNA polymerase; n=1; Oryza
sativa (indica cultivar-group)|Rep: DNA-directed RNA
polymerase - Oryza sativa subsp. indica (Rice)
Length = 1507
Score = 31.1 bits (67), Expect = 8.7
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 89 GXGRPGRVKRKNLRKGQGGGAA 24
G RPG RKN +GQGGG A
Sbjct: 1306 GSSRPGEWNRKNNNRGQGGGRA 1327
>UniRef50_Q6ZUN4 Cluster: CDNA FLJ43520 fis, clone PLACE5000001;
n=1; Homo sapiens|Rep: CDNA FLJ43520 fis, clone
PLACE5000001 - Homo sapiens (Human)
Length = 166
Score = 31.1 bits (67), Expect = 8.7
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -1
Query: 324 WMKNR*NSIMCLV*RLRTSWSVVSDAGVQSW-PGEVHPSCQNFDPAKAYSCPQASCEHPI 148
W++NR + + L W+ +G QSW PG P +++PA + PQA E +
Sbjct: 68 WLRNRVRAGV-----LSRGWAREPGSGRQSWCPGGGGPGRLHWEPAPGWGVPQAYREQTL 122
Query: 147 IYCAPGLWQA 118
+ GL A
Sbjct: 123 LLRRGGLQPA 132
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 424,177,560
Number of Sequences: 1657284
Number of extensions: 8264468
Number of successful extensions: 23182
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 22485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23159
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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