Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0417.Seq
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   129   1e-31
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   128   3e-31
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    27   0.84 
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   1.5  
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    25   4.5  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    24   7.8  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    24   7.8  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  129 bits (312), Expect = 1e-31
 Identities = 59/83 (71%), Positives = 68/83 (81%)
 Frame = -2

Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRP 75
           QTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+G GRP
Sbjct: 110 QTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRP 169

Query: 74  GRVKRKNLRKGQGGGAANDEEED 6
           GR KRK LR  Q GG   + EE+
Sbjct: 170 GRCKRKRLRSQQEGGEGEEAEEE 192



 Score = 93.5 bits (222), Expect = 1e-20
 Identities = 43/57 (75%), Positives = 51/57 (89%)
 Frame = -3

Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLRRRCSKL 233
           LTL+EKDPKRLFEGNA+ RRLVR+G+LDE +MKLDYVL L+IEDFLERRL+ +  KL
Sbjct: 60  LTLDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKL 116


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  128 bits (309), Expect = 3e-31
 Identities = 59/82 (71%), Positives = 67/82 (81%)
 Frame = -2

Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRP 75
           QTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+G GRP
Sbjct: 110 QTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRP 169

Query: 74  GRVKRKNLRKGQGGGAANDEEE 9
           GR KRK LR  +GG     EEE
Sbjct: 170 GRCKRKRLRSQEGGEGEEAEEE 191



 Score = 93.1 bits (221), Expect = 1e-20
 Identities = 43/57 (75%), Positives = 51/57 (89%)
 Frame = -3

Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLRRRCSKL 233
           LTL+EKDPKRLFEGNA+ RRLVR+G+LDE +MKLDYVL L+IEDFLERRL+ +  KL
Sbjct: 60  LTLDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKL 116


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -3

Query: 334 IGVLDEKQMKLDYVLGLKIEDFLERRLRRRCS---KLAWRSPSIMPEF*SGK 188
           +G++ EK M+LD V G K+E  ++RR   +     +  W   +I  E+ S K
Sbjct: 101 MGLVGEK-MELDAVKGRKVESRVDRRKLEKAERKIRAKWEKRTIKAEYESSK 151


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 316 KQMKLDYVLGLKIEDFLERRLRRRCSKLAWRSPSIMPEF*SGK 188
           + ++L  + G+ ++   E R R+  SK+ W +   +P F   K
Sbjct: 169 QNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNK 211


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -3

Query: 397 LEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 254
           L+  DP RL   N L  +L  +G+L  K    D      +     RRL
Sbjct: 64  LDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRL 111


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 68  VKRKNLRKGQGGGAANDEE 12
           V R+N R G+G   AN EE
Sbjct: 219 VSRQNSRTGRGAAVANTEE 237


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 224 KSIHHARILIRQRHIRVRKQVVNIPSFIVRL 132
           +S+ H R L   +H+R+     N P+ I +L
Sbjct: 306 RSLDHLRTLENLKHLRITLSYFNKPTDIAKL 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,256
Number of Sequences: 5004
Number of extensions: 31668
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)