Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0417.Seq
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 132 8e-32
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 132 8e-32
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 127 4e-30
07_03_1357 - 25982861-25983068,25983354-25983361 71 5e-13
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 65 2e-11
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 0.80
02_03_0357 + 18075171-18077240 29 1.8
12_02_0441 + 19115990-19116478 28 2.4
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 27 4.3
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 27 5.6
12_02_0071 + 13207111-13207280,13208100-13208251,13208728-13208903 27 7.5
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 27 7.5
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 27 7.5
07_03_0366 + 17321948-17322331 27 7.5
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 7.5
04_04_0712 + 27476319-27476569,27477150-27477402,27477535-274779... 26 9.9
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 26 9.9
01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932 26 9.9
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 132 bits (320), Expect = 8e-32
Identities = 60/83 (72%), Positives = 71/83 (85%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRP 75
QT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFG G P
Sbjct: 112 QTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPP 171
Query: 74 GRVKRKNLRKGQGGGAANDEEED 6
GRVKRKN +K GGG +EE++
Sbjct: 172 GRVKRKNQKKASGGGGDGEEEDE 194
Score = 67.3 bits (157), Expect = 4e-12
Identities = 31/51 (60%), Positives = 41/51 (80%)
Frame = -3
Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
LTL+EK+P+R+FEG AL RR+ R G+L + Q KLDYVL L +E+FL RRL+
Sbjct: 62 LTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQ 112
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 132 bits (320), Expect = 8e-32
Identities = 60/83 (72%), Positives = 71/83 (85%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRP 75
QT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFG G P
Sbjct: 135 QTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPP 194
Query: 74 GRVKRKNLRKGQGGGAANDEEED 6
GRVKRKN +K GGG +EE++
Sbjct: 195 GRVKRKNQKKASGGGGDGEEEDE 217
Score = 67.3 bits (157), Expect = 4e-12
Identities = 31/51 (60%), Positives = 41/51 (80%)
Frame = -3
Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
LTL+EK+P+R+FEG AL RR+ R G+L + Q KLDYVL L +E+FL RRL+
Sbjct: 85 LTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQ 135
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 127 bits (306), Expect = 4e-30
Identities = 58/75 (77%), Positives = 66/75 (88%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRP 75
QT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFG G P
Sbjct: 328 QTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPP 387
Query: 74 GRVKRKNLRKGQGGG 30
GRVKRKN +K GGG
Sbjct: 388 GRVKRKNQKKASGGG 402
Score = 67.3 bits (157), Expect = 4e-12
Identities = 31/51 (60%), Positives = 41/51 (80%)
Frame = -3
Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
LTL+EK+P+R+FEG AL RR+ R G+L + Q KLDYVL L +E+FL RRL+
Sbjct: 278 LTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQ 328
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 70.5 bits (165), Expect = 5e-13
Identities = 35/57 (61%), Positives = 40/57 (70%)
Frame = -2
Query: 179 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRPGRVKRKNLRKGQGGGAANDEEE 9
RV +Q+VNIPSFIVRL+S KHI FSL SP G RVKRKN + GGG +EEE
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGGGGDGEEEEE 59
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 64.9 bits (151), Expect = 2e-11
Identities = 30/51 (58%), Positives = 40/51 (78%)
Frame = -3
Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
LTL+EK+P+R+FEG AL R + R G+L E Q KLDYVL L +E+FL+ RL+
Sbjct: 51 LTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQ 101
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHI 180
QT VFK G KSIHH +LIRQ HI
Sbjct: 101 QTIVFKNGTVKSIHHDHVLIRQHHI 125
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 29.9 bits (64), Expect = 0.80
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 89 GXGRPGRVKRKNLRKGQGGG 30
G RPG RKN +GQGGG
Sbjct: 1369 GSSRPGEWNRKNNNRGQGGG 1388
>02_03_0357 + 18075171-18077240
Length = 689
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = -2
Query: 275 GLLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV----RLDSGKHIDF 108
G G+SS + +AG+A + AR+ RH+ VR V P+ + RL G D
Sbjct: 138 GGAGSSSSSTAGRAGVAVQLAMARLEEELRHLMVRHAVPLDPTGLFFSLRRLSLGSMDDL 197
Query: 107 SLKSPFGXGRP 75
S F P
Sbjct: 198 DTSSEFDAATP 208
>12_02_0441 + 19115990-19116478
Length = 162
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -2
Query: 155 IPSFIVRLDSGKHIDFSLKSPFGXGRPGRVKRKNLRKGQGGGAANDEEED 6
+ +F++RL K I K+ G G GR K+ KG+GGG ++EEE+
Sbjct: 108 VKTFVIRLVE-KVIGLE-KNGRGGGGGGRKKKG---KGKGGGGEDEEEEE 152
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 246 GVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPIIYCA 136
G SW CQ++DPAK Y+ Q H I+ A
Sbjct: 400 GNLSWRSREFLDCQSYDPAKVYNFIQTGV-HGRIFAA 435
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 251 TQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 138
T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 86 TVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>12_02_0071 + 13207111-13207280,13208100-13208251,13208728-13208903
Length = 165
Score = 26.6 bits (56), Expect = 7.5
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = -1
Query: 357 PXYVVWFVLEYWMKNR*NSIMCLV*RLRTSWSVVSDAGVQSWPGEVHPSCQNFDPAKAYS 178
P WF E K R + + R+ V+ A VQ W + + N D A+A
Sbjct: 55 PWRWTWFSPETLAKRR--YLGSALRRVTVFKGVIVAAPVQHWARLLPRTPYNIDRARATV 112
Query: 177 CPQASCEHPII 145
CP + P+I
Sbjct: 113 CPSQAVNPPLI 123
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 206 RILIRQRHIRVRKQVVN--IPSFIVRLDSGKHIDFSLKSPFG 87
R L+ + I +R +N IPS+I +D+ KH+D S G
Sbjct: 281 RELVSMKTIILRNCSINGSIPSYIGNMDNLKHLDLSFNKLTG 322
>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 39 LSLAEVLPLDTSRTTXTEWRFQREVNVLARVQAHNK*WDVHNL 167
L+L + L +S+ + +EW E N+ ARVQ N D+ L
Sbjct: 1242 LALKTMGGLMSSKQSVSEWEVIAESNIGARVQGKNDVMDILKL 1284
>07_03_0366 + 17321948-17322331
Length = 127
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 125 GKHIDFSLKSPFGXGRPGRVKRKNLRKGQGGGAANDE 15
G ++ +S G G R +R+ R+G GGGA E
Sbjct: 32 GDTVEAERQSRHGGGGRRRRQRRGRRRGSGGGAMEAE 68
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 277 EDFLERRLRRRCSKLAWRSPSIMPEF*SGKGIFV 176
E+ +E R+ CSKLA SPS P + G+ + V
Sbjct: 87 ENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAV 120
>04_04_0712 +
27476319-27476569,27477150-27477402,27477535-27477914,
27479738-27479864,27479945-27480110,27480221-27480359,
27481854-27481987,27482087-27482229,27482367-27482565,
27482688-27483010
Length = 704
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 77 PGRVKRKNLRKGQGGGAA 24
PG V+R++ R+G GGG A
Sbjct: 5 PGGVRRRSGRRGAGGGGA 22
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 358 ALXRRLVRIGVLDEKQMKLDYVLGLKI 278
AL R L+ IGV+ + D++LG K+
Sbjct: 170 ALRRGLLEIGVVPDNGFTYDHILGTKV 196
>01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932
Length = 219
Score = 26.2 bits (55), Expect = 9.9
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -2
Query: 251 TQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 87
T V G A+S + AR+L+ + +VVN+ ++ S +H+ ++PFG
Sbjct: 2 TPVKVFGPAQSTNVARVLLCLEEVGAEYEVVNVDFTVMEHKSPEHLK---RNPFG 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,022,600
Number of Sequences: 37544
Number of extensions: 248499
Number of successful extensions: 808
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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