Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0417.Seq
(405 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.) 150 4e-37
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18) 28 2.5
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4) 28 3.3
SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05) 27 4.4
SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063) 27 5.8
SB_19085| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 150 bits (364), Expect = 4e-37
Identities = 67/83 (80%), Positives = 75/83 (90%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRP 75
QTQVFK GLAKSIHHAR+LIRQRHIRVRKQ+VN+PSF+VRLDS KHIDFSL SP+G GRP
Sbjct: 108 QTQVFKLGLAKSIHHARVLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRP 167
Query: 74 GRVKRKNLRKGQGGGAANDEEED 6
GRVKRKN++KGQGG DE+ED
Sbjct: 168 GRVKRKNMKKGQGGSGGEDEDED 190
Score = 95.5 bits (227), Expect = 1e-20
Identities = 46/57 (80%), Positives = 51/57 (89%)
Frame = -3
Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLRRRCSKL 233
LTLEEKDP+RLFEGNAL RRLVRIGVLDE + KLDYVLGL+IEDFLERRL+ + KL
Sbjct: 58 LTLEEKDPRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKL 114
>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 110 FSLKSPFGXGRPGRVKRKNLRKGQGGGAA 24
F L PF G PGR+ ++N+ + + GG A
Sbjct: 1096 FELLKPFIFGYPGRLGQRNVARVRAGGGA 1124
>SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = -1
Query: 270 SWSVVSDAGVQSWPGEVHPSC-------QNFDPAKAYSCPQASCEHPIIYCAPGLWQ 121
+W+ +S+ + +W H +C +FD +KAY +S + +++ PGL+Q
Sbjct: 445 TWASLSEKNM-TWDQNSHKTCFIDDGNPVSFDGSKAYEVLNSSGTNHVVFSKPGLYQ 500
>SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)
Length = 1191
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 242 TPASETTLQEVLNLQTKHIIEFHLFFIQYSNTNQ 343
TP+SE+ L ++N+++ + H FI+Y +T+Q
Sbjct: 699 TPSSESPLHVMVNVKSSTEMMVHWKFIEYFDTSQ 732
>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
Length = 259
Score = 27.9 bits (59), Expect = 3.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 155 CSQLACGHEYAFAGSKFWHDGWTSP 229
C++LA Y++ G +FW + W+ P
Sbjct: 72 CARLAEQKNYSYFGVQFWGECWSGP 96
>SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)
Length = 494
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = -3
Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEK--QMKLDYVLGLKIEDFLERRLRRRCSK 236
++L+ K K+L +L R+L R+ ++K ++KL Y EDF E+ +++C++
Sbjct: 413 ISLDSKGTKKLLF--SLKRKLERVRDREDKLIKLKLWYEWQAYSEDFQEKSSKKKCAR 468
>SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)
Length = 499
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 271 SPQSSDQAHNRVSSVFHPVLQYEPDDVXGHYLRTISWGPS 390
SP+ +D H VSSV LQ DD H L+ ++ PS
Sbjct: 219 SPEVADFFHELVSSVSDISLQLHKDDTT-HMLKDFAFHPS 257
>SB_19085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 74 GRVKRKNLRKGQGGGAANDEEED 6
G V+ +++R+G GGG DE E+
Sbjct: 337 GDVRSEHIRQGGGGGHGRDEHEE 359
>SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 260 SSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 156
+S +VFK + HA I IRQ I +R ++N
Sbjct: 194 NSLVEVFKVNPHLTYQHAFIYIRQMAIHLRNAIIN 228
>SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Frame = -2
Query: 95 PFGXG--RPG--RVKRKNLRKGQGG-GAANDEEE 9
P G G PG RVK++ +++G+G GAA +EEE
Sbjct: 294 PMGNGGKNPGLLRVKKRTVKRGKGNRGAALNEEE 327
>SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 101 SERSQCACQSPGAQ*MMGCSQLACGHE 181
S +SQ C S ++GC+QL C H+
Sbjct: 226 STQSQLKCYSGHVIPILGCAQLTCKHK 252
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,078,835
Number of Sequences: 59808
Number of extensions: 269108
Number of successful extensions: 629
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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