Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0417.Seq
(405 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 135 1e-32
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 29 0.96
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 29 1.3
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 29 1.3
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 29 1.3
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 29 1.7
AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic in... 27 3.9
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 27 5.1
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 27 5.1
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr... 27 5.1
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr... 27 5.1
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr... 27 5.1
U21321-11|AAG00044.1| 460|Caenorhabditis elegans Hypothetical p... 27 5.1
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 27 5.1
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 27 5.1
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 27 5.1
AF067619-3|AAV28340.1| 153|Caenorhabditis elegans Hypothetical ... 26 9.0
AF067619-2|AAC17566.2| 202|Caenorhabditis elegans Hypothetical ... 26 9.0
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 135 bits (327), Expect = 1e-32
Identities = 62/80 (77%), Positives = 71/80 (88%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRP 75
QTQVFK GLAKSIHHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+G GRP
Sbjct: 110 QTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRP 169
Query: 74 GRVKRKNLRKGQGGGAANDE 15
GRVKR+ LRKG G G ++E
Sbjct: 170 GRVKRRTLRKGDGAGGDDEE 189
Score = 97.1 bits (231), Expect = 4e-21
Identities = 46/57 (80%), Positives = 52/57 (91%)
Frame = -3
Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLRRRCSKL 233
LTLE+KDPKRLFEGNAL RRLV+IGVLDE +MKLDYVLGLK+EDFLERRL+ + KL
Sbjct: 60 LTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKL 116
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 29.5 bits (63), Expect = 0.96
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -2
Query: 233 GLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 96
G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 118 GMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 244 TCV*DDAPRSPQSSDQAHNRVSSVFHPVLQYEPD 345
+C+ D AP +P++ + + + SV HP +YE D
Sbjct: 2454 SCMMDVAPFTPETVAEKSSLIQSVLHPNNEYEHD 2487
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 244 TCV*DDAPRSPQSSDQAHNRVSSVFHPVLQYEPD 345
+C+ D AP +P++ + + + SV HP +YE D
Sbjct: 2454 SCMMDVAPFTPETVAEKSSLIQSVLHPNNEYEHD 2487
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 29.1 bits (62), Expect = 1.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 155 CSQLACGHEYAFAGSKFWHDG 217
C + CG E+ F K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 152 GCSQLACGHEYAFAGSKFWH 211
GC +L +EY FA K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358
>AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic
initiation factor protein3.I protein.
Length = 327
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 256 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVXGHY--LRTISWGPS 390
+DA + Q+S A + + ++H V + E GH+ + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -1
Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -1
Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform c protein.
Length = 1576
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 379 KRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 254
KRL EG + + LV I + ++ + K+D+ + F+ ++L
Sbjct: 264 KRLEEGGNINKNLVSIFLRNDLEKKIDFKFSADVYVFINQKL 305
>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform b protein.
Length = 1610
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 379 KRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 254
KRL EG + + LV I + ++ + K+D+ + F+ ++L
Sbjct: 264 KRLEEGGNINKNLVSIFLRNDLEKKIDFKFSADVYVFINQKL 305
>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform a protein.
Length = 1595
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 379 KRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 254
KRL EG + + LV I + ++ + K+D+ + F+ ++L
Sbjct: 264 KRLEEGGNINKNLVSIFLRNDLEKKIDFKFSADVYVFINQKL 305
>U21321-11|AAG00044.1| 460|Caenorhabditis elegans Hypothetical
protein ZK177.1 protein.
Length = 460
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 245 PASETTLQEVLNLQTKHIIEFHLFFIQYSN--TNQTTXKG 358
P ++T +QEV + ++ I E+ + YSN TNQ T +G
Sbjct: 386 PINQTNIQEVQSEDSEGIYEYFVDQPNYSNQGTNQGTCQG 425
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -1
Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -1
Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -1
Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF067619-3|AAV28340.1| 153|Caenorhabditis elegans Hypothetical
protein K03E5.2b protein.
Length = 153
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 143 IVRLDSGKHIDFSLKSPFGXGRPGRVKRKNLRK 45
IVRL SG + S K G G P VK K+L++
Sbjct: 97 IVRLQSGTNQFESQKGMTGFGTPRDVKGKHLKR 129
>AF067619-2|AAC17566.2| 202|Caenorhabditis elegans Hypothetical
protein K03E5.2a protein.
Length = 202
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 143 IVRLDSGKHIDFSLKSPFGXGRPGRVKRKNLRK 45
IVRL SG + S K G G P VK K+L++
Sbjct: 146 IVRLQSGTNQYESQKGMTGFGTPRDVKGKHLKR 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,565,009
Number of Sequences: 27780
Number of extensions: 194132
Number of successful extensions: 562
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -