Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0417.Seq
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   4.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.0  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   7.0  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    20   9.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    20   9.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 263 LQEVLNLQTKHIIEFHLFFIQYSNTNQ 343
           ++ V N+  K  + F L F+Q  N N+
Sbjct: 42  IRPVQNMTEKVHVNFGLAFVQLINVNE 68


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor
          protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 39 LSLAEVLPLDTSRTTXTEW 95
          LSL  V+ LDT++    EW
Sbjct: 10 LSLVSVVLLDTTQEEKLEW 28


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 400 TLEEKDPKRLFEGNALXR 347
           T EEK P+  F G  L R
Sbjct: 17  TPEEKRPRTAFSGEQLAR 34


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 295 VLGLKIEDFLERRLRRRCSKLAWRSPSI 212
           V+G KI++ L   L   C++   R   I
Sbjct: 48  VIGKKIKELLPEVLNNHCNRCTSRQIGI 75


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 319 EKQMKLDYVLGLKIEDFLERRLRRRCSKLAWRSP 218
           +++M L+Y L +K     E++L    SK   +SP
Sbjct: 57  KRKMILEYELYIKYSHTHEKKLVLERSKTKSKSP 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,538
Number of Sequences: 438
Number of extensions: 2212
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)