Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0417.Seq
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   126   6e-30
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   124   2e-29
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    29   1.6  
At1g43730.1 68414.m05028 hypothetical protein                          28   2.1  
At5g41310.1 68418.m05020 kinesin motor protein-related                 27   3.6  
At5g28615.1 68418.m03493 hypothetical protein                          27   3.6  
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf...    27   3.6  
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf...    27   3.6  
At1g60720.1 68414.m06835 hypothetical protein                          27   4.8  
At3g62390.1 68416.m07008 expressed protein several hypothetical ...    27   6.3  
At2g40475.1 68415.m04995 expressed protein                             27   6.3  
At1g02020.2 68414.m00122 nitroreductase family protein contains ...    27   6.3  
At1g02020.1 68414.m00121 nitroreductase family protein contains ...    27   6.3  
At3g62590.1 68416.m07031 lipase class 3 family protein contains ...    26   8.3  
At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family pr...    26   8.3  

>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  126 bits (304), Expect = 6e-30
 Identities = 60/87 (68%), Positives = 73/87 (83%), Gaps = 4/87 (4%)
 Frame = -2

Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRP 75
           QT VFK+G+AKSIHH+R+LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFG GRP
Sbjct: 112 QTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRP 171

Query: 74  GRVKRKN----LRKGQGGGAANDEEED 6
           GRVKR+N     +K  GGG A+ ++E+
Sbjct: 172 GRVKRRNEKSASKKASGGGDADGDDEE 198



 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 34/51 (66%), Positives = 42/51 (82%)
 Frame = -3

Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
           LTL+EK P+R+FEG AL RR+ R G+LDE Q KLDYVL L +E+FLERRL+
Sbjct: 62  LTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQ 112


>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  124 bits (300), Expect = 2e-29
 Identities = 57/83 (68%), Positives = 69/83 (83%)
 Frame = -2

Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGXGRP 75
           QT VFK+G+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFG GRP
Sbjct: 112 QTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRP 171

Query: 74  GRVKRKNLRKGQGGGAANDEEED 6
           GRVKR+N R G    +  D +ED
Sbjct: 172 GRVKRRNERAGAKKASGGDGDED 194



 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 34/51 (66%), Positives = 43/51 (84%)
 Frame = -3

Query: 403 LTLEEKDPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
           LTL+EK+P+R+FEG AL RR+ R G+LDE Q KLDYVL L +E+FLERRL+
Sbjct: 62  LTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQ 112


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 90  EWRFQREVNVLARVQAHN 143
           E RF REVN+++RVQ HN
Sbjct: 60  ESRFVREVNMMSRVQHHN 77


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 197 SKFWHDGWTSPGQL 238
           +KFWHD WT  G L
Sbjct: 77  AKFWHDNWTGHGPL 90


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 253 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHH 146
           RRR S  A  S  +   F  G   F+ AS++ TSHH
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHH 176


>At5g28615.1 68418.m03493 hypothetical protein
          Length = 149

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 197 SKFWHDGWTSPGQL 238
           +KFWHD WT  G L
Sbjct: 9   AKFWHDDWTGLGPL 22


>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
            profile: PF00400 WD domain, G-beta repeat (7 copies)
          Length = 1135

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 308  ETRLCAWSED*GLLGASSQTQVFKAGLAKSIHHARILIRQRHIRV 174
            +++LC WS D     AS Q Q+        + H R+   Q  I V
Sbjct: 950  DSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHV 994


>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
            profile: PF00400 WD domain, G-beta repeat (7 copies)
          Length = 1137

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 308  ETRLCAWSED*GLLGASSQTQVFKAGLAKSIHHARILIRQRHIRV 174
            +++LC WS D     AS Q Q+        + H R+   Q  I V
Sbjct: 950  DSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHV 994


>At1g60720.1 68414.m06835 hypothetical protein
          Length = 289

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 203 FWHDGWTSPGQL 238
           FWHD WTS G L
Sbjct: 25  FWHDSWTSLGPL 36


>At3g62390.1 68416.m07008 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 475

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -1

Query: 282 RLRTSWSVVSDAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPIIYCAPGL 127
           ++RT  ++++ +G+  +  + HPS     P    S     C H   +C PG+
Sbjct: 411 QMRTPVTLLNVSGLSQYRIDAHPSIYGTKPENRRSRAVQDCSH---WCLPGV 459


>At2g40475.1 68415.m04995 expressed protein
          Length = 193

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 270 SWSVVSDAGVQSWPGEVHPSCQNFDPAKAYSCPQA 166
           SWS  S +   S+     PS     P K YSC ++
Sbjct: 107 SWSSASSSSSSSYSSSSPPSKVEHRPRKCYSCSRS 141


>At1g02020.2 68414.m00122 nitroreductase family protein contains
           Pfam PF00881: nitroreductase family protein profile;
           contains Prosite PS00343: Gram-positive cocci surface
           proteins 'anchoring' hexapeptide
          Length = 543

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 246 GVQSWPGEVHPSCQNFDPAKAY 181
           G  +WP  V+PS  N  P +AY
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAY 185


>At1g02020.1 68414.m00121 nitroreductase family protein contains
           Pfam PF00881: nitroreductase family protein profile;
           contains Prosite PS00343: Gram-positive cocci surface
           proteins 'anchoring' hexapeptide
          Length = 642

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 246 GVQSWPGEVHPSCQNFDPAKAY 181
           G  +WP  V+PS  N  P +AY
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAY 185


>At3g62590.1 68416.m07031 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 65  KRKNLRKGQGGGAANDEEED 6
           K K  R G GGG   DEEE+
Sbjct: 103 KGKRQRSGGGGGGEEDEEEE 122


>At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 458

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 80  RPGRVK-RKNLRKGQGGGAANDEEED 6
           R GR + +K  R G+GGG  + EEE+
Sbjct: 307 RCGRFRSKKRARVGEGGGGEDQEEEE 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,188,328
Number of Sequences: 28952
Number of extensions: 183198
Number of successful extensions: 488
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)