Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0416.Seq
(407 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 164 5e-40
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 100 1e-20
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 85 5e-16
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 66 3e-10
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 62 6e-09
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 62 6e-09
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 60 2e-08
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 57 2e-07
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 55 6e-07
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 52 3e-06
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 48 1e-04
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 45 7e-04
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 44 0.002
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 42 0.005
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 42 0.005
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 41 0.011
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 41 0.011
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 39 0.045
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 39 0.045
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 38 0.10
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 38 0.10
UniRef50_Q9BZG2 Cluster: Testicular acid phosphatase precursor; ... 38 0.10
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 37 0.18
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 37 0.18
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 36 0.24
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 36 0.31
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 36 0.42
UniRef50_A7QH99 Cluster: Chromosome chr18 scaffold_96, whole gen... 36 0.42
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 36 0.42
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.42
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 35 0.55
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 35 0.55
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 35 0.55
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 35 0.73
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 0.96
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 34 0.96
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 34 0.96
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 34 1.3
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 34 1.3
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 34 1.3
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 33 1.7
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 33 2.2
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 33 2.9
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 33 2.9
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 33 2.9
UniRef50_A2QT05 Cluster: Putative uncharacterized protein; n=1; ... 32 3.9
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 32 5.1
UniRef50_UPI00015B6361 Cluster: PREDICTED: similar to CG11866-PA... 31 6.8
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 31 6.8
UniRef50_Q9C2M7 Cluster: Related to HFB30; n=2; Sordariales|Rep:... 31 6.8
UniRef50_A6RV89 Cluster: Putative uncharacterized protein; n=2; ... 31 6.8
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 31 6.8
UniRef50_A6PSY2 Cluster: Putative uncharacterized protein precur... 31 8.9
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 164 bits (399), Expect = 5e-40
Identities = 86/133 (64%), Positives = 94/133 (70%)
Frame = -1
Query: 407 VLTLEEKDPKRLFEGNALLRSSGSYWSTG*KTDETRLCAWSXD*GLLXASSQTQVFKAGL 228
+LTL+EKDP+RLFEGNALLR + L QTQVFK GL
Sbjct: 60 LLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGL 119
Query: 227 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRKNLR 48
AKSIHHAR+LIRQRHIRVRKQVVNIPSFIVRLDS KHIDFS +SP+GGGRPGRVKRKN +
Sbjct: 120 AKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAK 179
Query: 47 KGQGXGAANDXXE 9
KGQG A D E
Sbjct: 180 KGQGGAGAGDDEE 192
Score = 50.8 bits (116), Expect = 1e-05
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = -2
Query: 346 RLVRIGVLDEKQMKLDYVLGLKIEDF 269
RLVRIGVLDE +MKLDY+LGLKIEDF
Sbjct: 80 RLVRIGVLDEGKMKLDYILGLKIEDF 105
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 100 bits (240), Expect = 1e-20
Identities = 61/138 (44%), Positives = 77/138 (55%), Gaps = 5/138 (3%)
Frame = -1
Query: 407 VLTLEEKDPKRLFEGNALLRS---SGSYWSTG*KTDETRLCAWSXD*GLLXASSQ--TQV 243
+L L EKDP+ LFE N LLR +G K + +W+ + + Q TQV
Sbjct: 60 LLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFTSWAFGLRIYFSEKQLQTQV 119
Query: 242 FKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVK 63
F+ L KSI HA +L+ HIR+ KQVV+I F V LDS KH DF GGG PG VK
Sbjct: 120 FELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSRKHTDFFRHCLNGGGYPGSVK 179
Query: 62 RKNLRKGQGXGAANDXXE 9
RKN++KG+G A D E
Sbjct: 180 RKNVKKGRGGAGAGDDEE 197
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 85.0 bits (201), Expect = 5e-16
Identities = 51/124 (41%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Frame = -1
Query: 407 VLTLEEKDPKRLFEGNALLRSSGSYWSTG*KTDETRLCAWSXD*GLLXASSQTQVFKAGL 228
+L + KDPKRL EG ALLR + ++ + LL QT V++ G
Sbjct: 59 MLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGF 118
Query: 227 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGR-PGRVKRKNL 51
AKSIHHAR+LIR + I+V KQVV++PSF+VR++S I + +P GR KRKN
Sbjct: 119 AKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKNN 178
Query: 50 RKGQ 39
G+
Sbjct: 179 HAGK 182
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 65.7 bits (153), Expect = 3e-10
Identities = 35/62 (56%), Positives = 38/62 (61%)
Frame = +1
Query: 67 TRPGRPPPNGDFXEKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFARPALNT 246
TRPGRPPP+G+ KSMC S RT G FT CL TRI RIK A D ARP+L T
Sbjct: 50 TRPGRPPPSGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKT 109
Query: 247 CV 252
V
Sbjct: 110 SV 111
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 61.7 bits (143), Expect = 6e-09
Identities = 34/76 (44%), Positives = 42/76 (55%)
Frame = -1
Query: 407 VLTLEEKDPKRLFEGNALLRSSGSYWSTG*KTDETRLCAWSXD*GLLXASSQTQVFKAGL 228
+LTL+EK+P+R+FEG ALLR Y G ++ L QT VFK G
Sbjct: 50 LLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGT 109
Query: 227 AKSIHHARILIRQRHI 180
KSIHH +LIRQ HI
Sbjct: 110 VKSIHHDHVLIRQHHI 125
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 61.7 bits (143), Expect = 6e-09
Identities = 31/56 (55%), Positives = 36/56 (64%)
Frame = -1
Query: 176 VRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRKNLRKGQGXGAANDXXE 9
V +Q+VNIPSFIVRL+S KHI FS SP GG RVKRKN + G G + E
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGGGGDGEEEEE 82
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 60.1 bits (139), Expect = 2e-08
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = -1
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFG 87
Q +VF AGLAKS+HHAR+LI R I ++ Q+V++P F+VR D I+++ S +G
Sbjct: 115 QFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 56.8 bits (131), Expect = 2e-07
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKS 96
+L QT V + L+K+IH ARILI +HI+V+ Q+VN PSF+VR D+ I FS S
Sbjct: 106 ILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDNEIFISFSLNS 164
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 54.8 bits (126), Expect = 6e-07
Identities = 36/123 (29%), Positives = 57/123 (46%)
Frame = +3
Query: 36 TLSLAEVLPLDTSRTTSTEWRFXREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMM 215
T S + L ++ +++TEWR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S ++
Sbjct: 10 TTSSSSSLSGHSTWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVV 69
Query: 216 DGLRQASFEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTRRP*KGITFEQSLGVLLL 395
+ L Q + + ITFEQSL VL +
Sbjct: 70 NRLGQTQLVDLGLQSSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFV 129
Query: 396 EGE 404
G+
Sbjct: 130 SGQ 132
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 52.4 bits (120), Expect = 3e-06
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = -1
Query: 152 PSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRKNLR 48
PSF+VR+DS K D S SP GGGRPGRVK+K+L+
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLK 58
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 47.6 bits (108), Expect = 1e-04
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSP 93
+L QT VF+ GLA++ AR LI HI V +VV PS++V ++ I ++ SP
Sbjct: 102 ILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSP 161
Query: 92 FG-GGRPGRVK 63
F P R K
Sbjct: 162 FNDDNHPERAK 172
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 44.8 bits (101), Expect = 7e-04
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = -1
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRP 75
QT V+K GLA++I+ AR LI HI + + V P +IV IDF SPF P
Sbjct: 107 QTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPP 166
Query: 74 GRVKRKNLRK 45
+ +N+++
Sbjct: 167 TQQGEENVQQ 176
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 43.6 bits (98), Expect = 0.002
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 138
+L QT V++ GLAKSIHHAR LI H+ V + V P F+V
Sbjct: 103 ILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 41.9 bits (94), Expect = 0.005
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = -1
Query: 191 QRHIRVRKQVVNIPSFI-----VRLDSGKHIDFSXKSPFGGGRPGRVKRKNLRKGQGXGA 27
+R R R+ + IP + VR++ K IDFS GGGRPGRVKRK L+ A
Sbjct: 130 ERRYRGRRAFLVIPRVMGAPLSVRVEPQKLIDFSNTCLLGGGRPGRVKRKGLKVAAKKVA 189
Query: 26 AND 18
D
Sbjct: 190 GED 192
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 41.9 bits (94), Expect = 0.005
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = -1
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSP 93
QT + + GLAK++ AR I HI V +VV+ PS++V+ + I+F SP
Sbjct: 105 QTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 40.7 bits (91), Expect = 0.011
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSP 93
+L QTQV + GLA+++ AR I HI + + IP +V + HI + SP
Sbjct: 109 ILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 40.7 bits (91), Expect = 0.011
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKS 96
LL VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I +S
Sbjct: 91 LLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEITIKPES 147
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 38.7 bits (86), Expect = 0.045
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSP 93
+L QT VF+ GLA + AR I HI V + +N PS++V L I + SP
Sbjct: 101 ILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPNSP 160
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 38.7 bits (86), Expect = 0.045
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = -1
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
+++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 139 IYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 37.5 bits (83), Expect = 0.10
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 269 LXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
+ A V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 91 IEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 37.5 bits (83), Expect = 0.10
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKS 96
+L + V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 85 ILESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_Q9BZG2 Cluster: Testicular acid phosphatase precursor;
n=13; Eutheria|Rep: Testicular acid phosphatase
precursor - Homo sapiens (Human)
Length = 426
Score = 37.5 bits (83), Expect = 0.10
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 31 PXPCPLRRFFLLTRPGRPPPNG 96
P PCPL RF+ LT P RPP +G
Sbjct: 354 PAPCPLGRFYQLTAPARPPAHG 375
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 36.7 bits (81), Expect = 0.18
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
+L + +F+ GLA++ AR ++ +H+ V + VNIPS++V+
Sbjct: 68 ILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVK 113
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 36.7 bits (81), Expect = 0.18
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSP 93
LL VF+AG A S AR ++R +HI + + V+IPS+ ++ G I KS
Sbjct: 96 LLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY--QVSEGDVISLREKSR 153
Query: 92 FGGG 81
G
Sbjct: 154 ANAG 157
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 36.3 bits (80), Expect = 0.24
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = -1
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 138
QT VFK GLA++I AR LI I V + V+IP ++V
Sbjct: 104 QTVVFKKGLARTIKQARQLITHGFIAVNMKRVSIPGYMV 142
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 35.9 bits (79), Expect = 0.31
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 134 LDSGKHIDFSXKSPFGGGRPGRVKRKNLRKG--QGXGAAND 18
+DS KH DFS SP G R +VKRK L+ + G A+D
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLKVAAKKAAGGADD 41
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 35.5 bits (78), Expect = 0.42
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
LL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 82 LLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A7QH99 Cluster: Chromosome chr18 scaffold_96, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_96, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 223
Score = 35.5 bits (78), Expect = 0.42
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = +1
Query: 58 FLLTRPGRPPPNGDFXEKSMCLPESRRTINDGMFT 162
FL T PGRPPP G K MC S T N T
Sbjct: 66 FLFTLPGRPPPKGHVLAKPMCFCGSTLTDNGAPIT 100
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 35.5 bits (78), Expect = 0.42
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 108
+L Q+ VFK GL+ + AR+ + HI + + +N P +V ++IDF
Sbjct: 100 ILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 35.5 bits (78), Expect = 0.42
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = -1
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
VF+ +A +I AR LI HIRV + VNIPS++ +
Sbjct: 116 VFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMCK 152
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 35.1 bits (77), Expect = 0.55
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
LL A V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 89 LLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 35.1 bits (77), Expect = 0.55
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -1
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKS 96
V++ G + S AR L+ H+ V + VNIPSF+V G I+F KS
Sbjct: 99 VYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQIEFRQKS 146
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 35.1 bits (77), Expect = 0.55
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = -1
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 99 VYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 34.7 bits (76), Expect = 0.73
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 155 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASETTLQE 271
CS L H +FWH GW+SP Q TPA+ ++ E
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAESVGE 126
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 0.96
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 228 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 133
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 34.3 bits (75), Expect = 0.96
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
LL + + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 90 LLESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 34.3 bits (75), Expect = 0.96
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 108
LL + + V +AGLA SI AR +R ++ V + +IPSF R+ G + F
Sbjct: 95 LLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVRF 147
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 33.9 bits (74), Expect = 1.3
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = -1
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
+F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 81 LFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 33.9 bits (74), Expect = 1.3
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
LL +F G+A +I AR L+ RHI V +V+IPS+
Sbjct: 53 LLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSY 95
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 33.9 bits (74), Expect = 1.3
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = -1
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKS 96
V++ G A + AR L+ H+ V + VNIPS++V + G I+ KS
Sbjct: 104 VYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIEIKEKS 151
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 33.5 bits (73), Expect = 1.7
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
LL A V++ G A + AR L+ HIR+ + NIPS+ VR
Sbjct: 93 LLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYSVR 138
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 33.1 bits (72), Expect = 2.2
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -1
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 141
+F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 216 LFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 32.7 bits (71), Expect = 2.9
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 272 LLXASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
+L A V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 95 ILEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 32.7 bits (71), Expect = 2.9
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -1
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKS 96
V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I KS
Sbjct: 99 VYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEISLRDKS 146
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 32.7 bits (71), Expect = 2.9
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -1
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
+F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 95 LFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_A2QT05 Cluster: Putative uncharacterized protein; n=1;
Aspergillus niger|Rep: Putative uncharacterized protein
- Aspergillus niger
Length = 161
Score = 32.3 bits (70), Expect = 3.9
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -1
Query: 191 QRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRKNLRKGQGXGAAND 18
QR I++ Q + +P R D G +D + PF G +PGR++R + G + D
Sbjct: 71 QRRIKLNAQDLRVP----RTDPG--LDRHARRPFDGTQPGRIRRVTRKPHSGVSVSTD 122
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 31.9 bits (69), Expect = 5.1
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -1
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 138
+F+ G AKSI+ AR LI I + +V PSFI+
Sbjct: 91 IFRLGFAKSINQARQLITHGFIFINSILVKKPSFIL 126
>UniRef50_UPI00015B6361 Cluster: PREDICTED: similar to CG11866-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
CG11866-PA - Nasonia vitripennis
Length = 474
Score = 31.5 bits (68), Expect = 6.8
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -3
Query: 246 GVQSWPGEVHPSCQNFDPAKA-YSCPQASCEHPIIYCAPGLWQAH*LLXEISIRWRSSWT 70
G QS P P + PA++ SC +SC P+ AP L A L IS + +SS +
Sbjct: 394 GTQSPPPAQQP---HKHPAQSSISCTSSSCSPPVEPMAPPLSAAPITLPLISSKRKSSSS 450
Query: 69 CQEEE 55
C EE+
Sbjct: 451 CLEED 455
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 31.5 bits (68), Expect = 6.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 242 FKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 120
F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 160 FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_Q9C2M7 Cluster: Related to HFB30; n=2; Sordariales|Rep:
Related to HFB30 - Neurospora crassa
Length = 781
Score = 31.5 bits (68), Expect = 6.8
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 89 GGGRPGRVKRKNLRKGQGXGAAN 21
GGGR GR + N R GQG G AN
Sbjct: 648 GGGRGGRGRGDNARGGQGAGGAN 670
>UniRef50_A6RV89 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 345
Score = 31.5 bits (68), Expect = 6.8
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 245 PASETTLQEVLNLXTKHIIEFHLFFIQYSNTNQTTVEGHYLRTISWGPS 391
P SETT+ +VL + + +I ++F + Y GH++ TI G S
Sbjct: 108 PGSETTMGDVLIIAAQMLIAMYIFELLYRPKISPVSVGHHVGTILIGQS 156
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 31.5 bits (68), Expect = 6.8
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 98 VFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_A6PSY2 Cluster: Putative uncharacterized protein
precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
Putative uncharacterized protein precursor - Victivallis
vadensis ATCC BAA-548
Length = 565
Score = 31.1 bits (67), Expect = 8.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 256 DDAXRSPQSXDQAHNRVSSVFHPVLQYEPDDRRRALPSN 372
DDA R P++ D + + P P+DRR LP+N
Sbjct: 348 DDASRRPETDDPEAAKYELYYSPASGLLPEDRRTFLPAN 386
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 432,594,905
Number of Sequences: 1657284
Number of extensions: 8336885
Number of successful extensions: 21274
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 20713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21266
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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