Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0416.Seq
         (407 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    24   0.50 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    24   0.50 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.5  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   2.0  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   6.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   8.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   8.1  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    20   8.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   8.1  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 252 DAGVQSWPGEVHPSCQNFDPAKAYSCP 172
           +A V  W  +V P C+N + A  ++CP
Sbjct: 133 EARVCMWADQV-PECKNEEVAGGFTCP 158


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 252 DAGVQSWPGEVHPSCQNFDPAKAYSCP 172
           +A V  W  +V P C+N + A  ++CP
Sbjct: 133 EARVCMWADQV-PECKNEEVAGGFTCP 158


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 170 KQVVNIPSFIVRLD-SGKHIDFSXKSPFGGGRP 75
           ++V  +P  +  LD SG+ +  S  +PF G  P
Sbjct: 893 QEVPEVPYGLKVLDKSGRSVQLSWVAPFDGNSP 925


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 249 AGVQSWPGEVHPSCQNFDPAKAYSCPQAS 163
           AG+ SWP E      + +    + CP+ +
Sbjct: 148 AGICSWPDEAKKKGCSSEEVFQFECPKVN 176


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 401 TLEEKDPKRLFEGNALLR 348
           T EEK P+  F G  L R
Sbjct: 225 TAEEKRPRTAFSGAQLAR 242


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 210 CQNFDPAKAYSCPQASCE 157
           C+N  P     C +A+CE
Sbjct: 878 CENGKPTCWRECDKATCE 895


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 246 GVQSWPGEVHPSCQNF 199
           GV+ +   VH  C NF
Sbjct: 297 GVEHFEDVVHKKCSNF 312


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 83  GRPGRVKRKNLRKGQGXGAAND 18
           G PG     ++  G+G G  +D
Sbjct: 150 GSPGDASNASIGSGEGTGEEDD 171


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 83  GRPGRVKRKNLRKGQGXGAAND 18
           G PG     ++  G+G G  +D
Sbjct: 306 GSPGDASNASIGSGEGTGEEDD 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,904
Number of Sequences: 336
Number of extensions: 2045
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)