Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0416.Seq
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   144   4e-36
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   144   4e-36
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   4.5  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    25   4.5  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    25   6.0  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    24   7.9  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  144 bits (350), Expect = 4e-36
 Identities = 79/136 (58%), Positives = 92/136 (67%), Gaps = 3/136 (2%)
 Frame = -1

Query: 407 VLTLEEKDPKRLFEGNALLRSS---GSYWSTG*KTDETRLCAWSXD*GLLXASSQTQVFK 237
           +LTL+EKDPKRLFEGNA++R     G    +  K D   L     D   L    QTQVFK
Sbjct: 59  LLTLDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYV-LALRIED--FLERRLQTQVFK 115

Query: 236 AGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRK 57
            GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+  SP+GGGRPGR KRK
Sbjct: 116 LGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRK 175

Query: 56  NLRKGQGXGAANDXXE 9
            LR  Q  G   +  E
Sbjct: 176 RLRSQQEGGEGEEAEE 191


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  144 bits (350), Expect = 4e-36
 Identities = 78/127 (61%), Positives = 90/127 (70%), Gaps = 3/127 (2%)
 Frame = -1

Query: 407 VLTLEEKDPKRLFEGNALLRSS---GSYWSTG*KTDETRLCAWSXD*GLLXASSQTQVFK 237
           +LTL+EKDPKRLFEGNA++R     G    T  K D   L     D   L    QTQVFK
Sbjct: 59  LLTLDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYV-LALRIED--FLERRLQTQVFK 115

Query: 236 AGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRK 57
            GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+  SP+GGGRPGR KRK
Sbjct: 116 LGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRK 175

Query: 56  NLRKGQG 36
            LR  +G
Sbjct: 176 RLRSQEG 182


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 156 HPIIYCAPGLWQAH*LLXEISIRWRSSWTCQEEE 55
           HP +    GL Q H +   ++  W SSW   ++E
Sbjct: 321 HPKVTLIDGLVQLHVVPHHLASDWISSWKKNKQE 354


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 46  LRRFFLLTRPGRPPPNGDFXEKSMCLPESRRTINDGMFTTCLRTRICLCRIKIL 207
           ++R FL+  PG  PP+ +  +  + L    R  N       + T +  C++K L
Sbjct: 354 MKRIFLIDCPGIVPPSSNDSDAELLLKGVVRVENVSNPEAYIPTVLSRCKVKHL 407


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 296 CAWSXD*GLLXASSQTQVFK 237
           CAWS D  LL +SSQ    K
Sbjct: 437 CAWSTDSRLLVSSSQDTTLK 456


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 224 KSIHHARILIRQRHIRVRKQVVNIPSFIVRL 132
           +S+ H R L   +H+R+     N P+ I +L
Sbjct: 306 RSLDHLRTLENLKHLRITLSYFNKPTDIAKL 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,528
Number of Sequences: 5004
Number of extensions: 31369
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)