Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0416.Seq
(407 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 145 1e-35
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 145 1e-35
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 145 1e-35
07_03_1357 - 25982861-25983068,25983354-25983361 64 5e-11
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 62 2e-10
06_01_0851 - 6477629-6478810 28 2.5
02_04_0333 + 22096960-22097445,22098508-22098643,22099159-220993... 28 3.3
08_01_0181 + 1530623-1531626,1531723-1531902,1531998-1532177,153... 27 4.3
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 27 4.3
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 27 4.3
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 27 5.7
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 27 5.7
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 27 7.6
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 145 bits (352), Expect = 1e-35
Identities = 73/126 (57%), Positives = 88/126 (69%)
Frame = -1
Query: 407 VLTLEEKDPKRLFEGNALLRSSGSYWSTG*KTDETRLCAWSXD*GLLXASSQTQVFKAGL 228
+LTL+EK+P+R+FEG ALLR Y ++ L QT VFKAG+
Sbjct: 61 LLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGM 120
Query: 227 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRKNLR 48
AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFS SPFGGG PGRVKRKN +
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQK 180
Query: 47 KGQGXG 30
K G G
Sbjct: 181 KASGGG 186
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 145 bits (352), Expect = 1e-35
Identities = 73/126 (57%), Positives = 88/126 (69%)
Frame = -1
Query: 407 VLTLEEKDPKRLFEGNALLRSSGSYWSTG*KTDETRLCAWSXD*GLLXASSQTQVFKAGL 228
+LTL+EK+P+R+FEG ALLR Y ++ L QT VFKAG+
Sbjct: 84 LLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGM 143
Query: 227 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRKNLR 48
AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFS SPFGGG PGRVKRKN +
Sbjct: 144 AKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQK 203
Query: 47 KGQGXG 30
K G G
Sbjct: 204 KASGGG 209
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 145 bits (352), Expect = 1e-35
Identities = 73/126 (57%), Positives = 88/126 (69%)
Frame = -1
Query: 407 VLTLEEKDPKRLFEGNALLRSSGSYWSTG*KTDETRLCAWSXD*GLLXASSQTQVFKAGL 228
+LTL+EK+P+R+FEG ALLR Y ++ L QT VFKAG+
Sbjct: 277 LLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGM 336
Query: 227 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRKNLR 48
AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFS SPFGGG PGRVKRKN +
Sbjct: 337 AKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQK 396
Query: 47 KGQGXG 30
K G G
Sbjct: 397 KASGGG 402
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 63.7 bits (148), Expect = 5e-11
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = -1
Query: 179 RVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRKNLRKGQGXGAANDXXE 9
RV +Q+VNIPSFIVRL+S KHI FS SP GG RVKRKN + G G + E
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGGGGDGEEEEE 59
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 61.7 bits (143), Expect = 2e-10
Identities = 34/76 (44%), Positives = 42/76 (55%)
Frame = -1
Query: 407 VLTLEEKDPKRLFEGNALLRSSGSYWSTG*KTDETRLCAWSXD*GLLXASSQTQVFKAGL 228
+LTL+EK+P+R+FEG ALLR Y G ++ L QT VFK G
Sbjct: 50 LLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGT 109
Query: 227 AKSIHHARILIRQRHI 180
KSIHH +LIRQ HI
Sbjct: 110 VKSIHHDHVLIRQHHI 125
>06_01_0851 - 6477629-6478810
Length = 393
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 31 PXPCPLRRFFLLTRPGRPPP 90
P PCPLRR T P P P
Sbjct: 26 PPPCPLRRLLSTTAPVSPKP 45
>02_04_0333 +
22096960-22097445,22098508-22098643,22099159-22099325,
22099447-22099567,22099660-22099760,22099908-22100006,
22100512-22100622,22100709-22100788,22100880-22100949,
22101880-22101965,22102097-22102166,22102250-22102338,
22102448-22102572,22102686-22102766,22102848-22102908,
22103002-22103060,22103134-22103273,22103391-22103480,
22103917-22103976,22104072-22104188
Length = 782
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 10 SXXSLAAPXPCPLRRFFLLTRPGRPPPNGDFXEKSM 117
S SL+ P LRRF L P PPP+ +S+
Sbjct: 13 SSASLSVPDHLRLRRFRLHLHPRPPPPHPQLRSRSL 48
>08_01_0181 +
1530623-1531626,1531723-1531902,1531998-1532177,
1532363-1532442,1532528-1532701,1533001-1533118,
1533223-1533301
Length = 604
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 206 RILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRV 66
R+L R IRV ++ S ++ D+ K++DF GGG G V
Sbjct: 322 RLLSRLNKIRVIERPHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSV 368
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 246 GVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPIIYCA 136
G SW CQ++DPAK Y+ Q H I+ A
Sbjct: 400 GNLSWRSREFLDCQSYDPAKVYNFIQTGV-HGRIFAA 435
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 89 GGGRPGRVKRKNLRKGQGXG 30
G RPG RKN +GQG G
Sbjct: 1369 GSSRPGEWNRKNNNRGQGGG 1388
>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 39 LSLAEVLPLDTSRTTSTEWRFXREVNVLARVQAHNK*WDVHNL 167
L+L + L +S+ + +EW E N+ ARVQ N D+ L
Sbjct: 1242 LALKTMGGLMSSKQSVSEWEVIAESNIGARVQGKNDVMDILKL 1284
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 251 TQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 138
T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 86 TVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>01_05_0495 +
22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 26.6 bits (56), Expect = 7.6
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +2
Query: 263 LQEVLNLXTKHIIEFHLFFIQYSNTNQTTVEGH 361
+ +V ++H++ L F+ Y N+N T+V+ +
Sbjct: 562 ISDVAESRSRHLVPLFLTFMGYDNSNITSVDSY 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,356,705
Number of Sequences: 37544
Number of extensions: 253044
Number of successful extensions: 624
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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