Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0416.Seq
         (407 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             164   3e-41
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)                       28   3.4  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)                    27   4.5  
SB_17951| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)                   27   5.9  
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   5.9  
SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  164 bits (398), Expect = 3e-41
 Identities = 83/133 (62%), Positives = 93/133 (69%)
 Frame = -1

Query: 407 VLTLEEKDPKRLFEGNALLRSSGSYWSTG*KTDETRLCAWSXD*GLLXASSQTQVFKAGL 228
           +LTLEEKDP+RLFEGNALLR             +            L    QTQVFK GL
Sbjct: 57  LLTLEEKDPRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGL 116

Query: 227 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRKNLR 48
           AKSIHHAR+LIRQRHIRVRKQ+VN+PSF+VRLDS KHIDFS  SP+GGGRPGRVKRKN++
Sbjct: 117 AKSIHHARVLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMK 176

Query: 47  KGQGXGAANDXXE 9
           KGQG     D  E
Sbjct: 177 KGQGGSGGEDEDE 189



 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 22/26 (84%), Positives = 24/26 (92%)
 Frame = -2

Query: 346 RLVRIGVLDEKQMKLDYVLGLKIEDF 269
           RLVRIGVLDE + KLDYVLGL+IEDF
Sbjct: 77  RLVRIGVLDESRKKLDYVLGLRIEDF 102


>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
          Length = 259

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 155 CSQLACGHEYAFAGSKFWHDGWTSP 229
           C++LA    Y++ G +FW + W+ P
Sbjct: 72  CARLAEQKNYSYFGVQFWGECWSGP 96


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 400 PSRRRTPRDCSKVMPFYGRLVRIGVLDEKQMKLDYVLG 287
           PSR+RT R   ++   +G++ R G + E++ KL Y  G
Sbjct: 329 PSRKRTNRSKQRLEERFGKMDR-GSISERKRKLRYSSG 365


>SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)
          Length = 1191

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 242 TPASETTLQEVLNLXTKHIIEFHLFFIQYSNTNQ 343
           TP+SE+ L  ++N+ +   +  H  FI+Y +T+Q
Sbjct: 699 TPSSESPLHVMVNVKSSTEMMVHWKFIEYFDTSQ 732


>SB_17951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 299 IEFHLFFIQYSNTNQTTVEGHYL 367
           IEF LF +QY   NQ  +EG+ L
Sbjct: 70  IEFLLFSVQYGVNNQNRLEGYSL 92


>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
          Length = 1468

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 257  TTLQEVLNLXTKHIIEFHLFFIQYSNTNQTTVEGHYLR-TISW 382
            TT+  ++    +HII F  F  Q  NT      GH  R T++W
Sbjct: 1255 TTIISIVFTNEQHIIIFMNFIWQILNTRMRLTFGHDTRDTVNW 1297


>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1020

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = -3

Query: 210  CQNFDPAKAYSCPQASCEHP-IIYCAPGLWQAH*LLXEISIRWRSSWTCQEEEPPQG 43
            C NFD    + C   S  H   IYC  G       L  +++     W C+ + P  G
Sbjct: 953  CMNFDGG--FGCRPGSESHAGQIYCCLGALSITHSLHHVNVDMLGWWLCERQLPSGG 1007


>SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 260 SSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 156
           +S  +VFK     +  HA I IRQ  I +R  ++N
Sbjct: 194 NSLVEVFKVNPHLTYQHAFIYIRQMAIHLRNAIIN 228


>SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 101 SXRSQCACQSPGAQ*MMGCSQLACGHE 181
           S +SQ  C S     ++GC+QL C H+
Sbjct: 226 STQSQLKCYSGHVIPILGCAQLTCKHK 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,390,654
Number of Sequences: 59808
Number of extensions: 267148
Number of successful extensions: 726
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)