Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0416.Seq
(407 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 157 4e-39
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 30 0.74
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 29 1.3
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 29 1.7
AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical ... 29 1.7
Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z84574-8|CAE54891.1| 921|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical pr... 27 5.2
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 27 5.2
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 27 5.2
U21321-11|AAG00044.1| 460|Caenorhabditis elegans Hypothetical p... 27 5.2
AL022593-4|CAE54889.1| 921|Caenorhabditis elegans Hypothetical ... 27 5.2
AL022593-3|CAA18635.3| 928|Caenorhabditis elegans Hypothetical ... 27 5.2
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 27 5.2
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 27 5.2
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 27 5.2
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 26 9.1
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 26 9.1
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 157 bits (380), Expect = 4e-39
Identities = 86/133 (64%), Positives = 97/133 (72%), Gaps = 3/133 (2%)
Frame = -1
Query: 407 VLTLEEKDPKRLFEGNALLR---SSGSYWSTG*KTDETRLCAWSXD*GLLXASSQTQVFK 237
+LTLE+KDPKRLFEGNALLR G T K D L D L QTQVFK
Sbjct: 59 LLTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYV-LGLKVED--FLERRLQTQVFK 115
Query: 236 AGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRK 57
GLAKSIHHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFS +SP+GGGRPGRVKR+
Sbjct: 116 LGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRR 175
Query: 56 NLRKGQGXGAAND 18
LRKG G G ++
Sbjct: 176 TLRKGDGAGGDDE 188
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 29.9 bits (64), Expect = 0.74
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 233 GLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKS 96
G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 118 GMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 29.1 bits (62), Expect = 1.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 155 CSQLACGHEYAFAGSKFWHDG 217
C + CG E+ F K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 152 GCSQLACGHEYAFAGSKFWH 211
GC +L +EY FA K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358
>AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical
protein Y50D7A.1 protein.
Length = 791
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 43 PLRRFFLLTRPGRPPPNGDFXEKSMCLPESRRT 141
P + F + G+ P N DF +K +C P R T
Sbjct: 476 PQKLCFFFRKKGQKPENIDFSKKKLCAPLVRAT 508
>Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical protein
K07G5.1 protein.
Length = 998
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 22 LAAPXPCPLRRFFLLTRPGRPPPNGDFXEKSMCLPESRRTIND 150
L P P P R +T P PPP D E + SRR++ D
Sbjct: 953 LLPPKPEPRSRLIGMTSPTTPPPTADDDENA----NSRRSVAD 991
>Z84574-8|CAE54891.1| 921|Caenorhabditis elegans Hypothetical
protein F33E2.2b protein.
Length = 921
Score = 27.1 bits (57), Expect = 5.2
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -1
Query: 395 EEKDPKRLFEGNALLRSSGSYWST--G*KTDETRLCAWSXD*GLLXASSQTQVFKAGLAK 222
E +P ++ +A+ R SGSYW T G + R +S D G+ A + + G +
Sbjct: 561 EGANPPKILRNDAI-RHSGSYWETLGGARGSPARDSGFSQDSGMWSAGAGSCTAINGGGQ 619
Query: 221 SIHHARILIR 192
+ +++ L R
Sbjct: 620 QVCYSQTLYR 629
>Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 27.1 bits (57), Expect = 5.2
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -1
Query: 395 EEKDPKRLFEGNALLRSSGSYWST--G*KTDETRLCAWSXD*GLLXASSQTQVFKAGLAK 222
E +P ++ +A+ R SGSYW T G + R +S D G+ A + + G +
Sbjct: 561 EGANPPKILRNDAI-RHSGSYWETLGGARGSPARDSGFSQDSGMWSAGAGSCTAINGGGQ 619
Query: 221 SIHHARILIR 192
+ +++ L R
Sbjct: 620 QVCYSQTLYR 629
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>U21321-11|AAG00044.1| 460|Caenorhabditis elegans Hypothetical
protein ZK177.1 protein.
Length = 460
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 245 PASETTLQEVLNLXTKHIIEFHLFFIQYSN--TNQTTVEG 358
P ++T +QEV + ++ I E+ + YSN TNQ T +G
Sbjct: 386 PINQTNIQEVQSEDSEGIYEYFVDQPNYSNQGTNQGTCQG 425
>AL022593-4|CAE54889.1| 921|Caenorhabditis elegans Hypothetical
protein F33E2.2b protein.
Length = 921
Score = 27.1 bits (57), Expect = 5.2
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -1
Query: 395 EEKDPKRLFEGNALLRSSGSYWST--G*KTDETRLCAWSXD*GLLXASSQTQVFKAGLAK 222
E +P ++ +A+ R SGSYW T G + R +S D G+ A + + G +
Sbjct: 561 EGANPPKILRNDAI-RHSGSYWETLGGARGSPARDSGFSQDSGMWSAGAGSCTAINGGGQ 619
Query: 221 SIHHARILIR 192
+ +++ L R
Sbjct: 620 QVCYSQTLYR 629
>AL022593-3|CAA18635.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 27.1 bits (57), Expect = 5.2
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -1
Query: 395 EEKDPKRLFEGNALLRSSGSYWST--G*KTDETRLCAWSXD*GLLXASSQTQVFKAGLAK 222
E +P ++ +A+ R SGSYW T G + R +S D G+ A + + G +
Sbjct: 561 EGANPPKILRNDAI-RHSGSYWETLGGARGSPARDSGFSQDSGMWSAGAGSCTAINGGGQ 619
Query: 221 SIHHARILIR 192
+ +++ L R
Sbjct: 620 QVCYSQTLYR 629
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 244 TCV*DDAXRSPQSXDQAHNRVSSVFHPVLQYEPD 345
+C+ D A +P++ + + + SV HP +YE D
Sbjct: 2454 SCMMDVAPFTPETVAEKSSLIQSVLHPNNEYEHD 2487
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 244 TCV*DDAXRSPQSXDQAHNRVSSVFHPVLQYEPD 345
+C+ D A +P++ + + + SV HP +YE D
Sbjct: 2454 SCMMDVAPFTPETVAEKSSLIQSVLHPNNEYEHD 2487
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,742,650
Number of Sequences: 27780
Number of extensions: 196621
Number of successful extensions: 520
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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