Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0416.Seq
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   4.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.4  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   7.1  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor
          protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 39 LSLAEVLPLDTSRTTSTEW 95
          LSL  V+ LDT++    EW
Sbjct: 10 LSLVSVVLLDTTQEEKLEW 28



 Score = 21.0 bits (42), Expect = 5.4
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -3

Query: 360 CPSTVVWFVLEYWMKNR 310
           CP  +   +L+ W K R
Sbjct: 863 CPEAIYQLMLDCWQKER 879


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 263 LQEVLNLXTKHIIEFHLFFIQYSNTNQ 343
           ++ V N+  K  + F L F+Q  N N+
Sbjct: 42  IRPVQNMTEKVHVNFGLAFVQLINVNE 68


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 329 SNTNQTTVEGHYLRTISWGP 388
           S++  TT  GH +R  + GP
Sbjct: 285 SSSASTTCSGHTVRCFTGGP 304


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 401 TLEEKDPKRLFEGNALLR 348
           T EEK P+  F G  L R
Sbjct: 17  TPEEKRPRTAFSGEQLAR 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,289
Number of Sequences: 438
Number of extensions: 2327
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)