Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0416.Seq
(407 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 143 5e-35
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 141 1e-34
At5g01850.1 68418.m00104 protein kinase, putative similar to pro... 31 0.39
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 1.2
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 28 2.1
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 28 2.1
At1g43730.1 68414.m05028 hypothetical protein 28 2.1
At5g28615.1 68418.m03493 hypothetical protein 27 3.7
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr... 27 3.7
At1g60720.1 68414.m06835 hypothetical protein 27 4.8
At1g02020.2 68414.m00122 nitroreductase family protein contains ... 27 6.4
At1g02020.1 68414.m00121 nitroreductase family protein contains ... 27 6.4
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 143 bits (346), Expect = 5e-35
Identities = 72/133 (54%), Positives = 90/133 (67%)
Frame = -1
Query: 407 VLTLEEKDPKRLFEGNALLRSSGSYWSTG*KTDETRLCAWSXD*GLLXASSQTQVFKAGL 228
+LTL+EK+P+R+FEG ALLR Y ++ L QT VFK+G+
Sbjct: 61 LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120
Query: 227 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRKNLR 48
AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFS SPFGGGRPGRVKR+N R
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNER 180
Query: 47 KGQGXGAANDXXE 9
G + D E
Sbjct: 181 AGAKKASGGDGDE 193
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 141 bits (342), Expect = 1e-34
Identities = 75/137 (54%), Positives = 91/137 (66%), Gaps = 4/137 (2%)
Frame = -1
Query: 407 VLTLEEKDPKRLFEGNALLRSSGSYWSTG*KTDETRLCAWSXD*GLLXASSQTQVFKAGL 228
+LTL+EK P+R+FEG ALLR Y ++ L QT VFK+G+
Sbjct: 61 LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120
Query: 227 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSXKSPFGGGRPGRVKRKN-- 54
AKSIHH+R+LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+ SPFGGGRPGRVKR+N
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEK 180
Query: 53 --LRKGQGXGAANDXXE 9
+K G G A+ E
Sbjct: 181 SASKKASGGGDADGDDE 197
>At5g01850.1 68418.m00104 protein kinase, putative similar to
protein kinase [Arabidopsis thaliana]
gi|1054633|emb|CAA63387; contains protein kinase domain,
Pfam:PF00069
Length = 333
Score = 30.7 bits (66), Expect = 0.39
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 81 TSTEWRFXREVNVLARVQAHN 143
+S E RF REVN+++RVQ HN
Sbjct: 57 SSLESRFVREVNMMSRVQHHN 77
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 79 RPPPNGDFXEKSMCLPESRRTIND 150
RPPP+GD + C+ E T+ D
Sbjct: 58 RPPPSGDTVPNNFCIIEGSETVQD 81
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 308 ETRLCAWSXD*GLLXASSQTQVFKAGLAKSIHHARILIRQRHIRV 174
+++LC WS D AS Q Q+ + H R+ Q I V
Sbjct: 950 DSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHV 994
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 308 ETRLCAWSXD*GLLXASSQTQVFKAGLAKSIHHARILIRQRHIRV 174
+++LC WS D AS Q Q+ + H R+ Q I V
Sbjct: 950 DSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHV 994
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 28.3 bits (60), Expect = 2.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 197 SKFWHDGWTSPGQL 238
+KFWHD WT G L
Sbjct: 77 AKFWHDNWTGHGPL 90
>At5g28615.1 68418.m03493 hypothetical protein
Length = 149
Score = 27.5 bits (58), Expect = 3.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 197 SKFWHDGWTSPGQL 238
+KFWHD WT G L
Sbjct: 9 AKFWHDDWTGLGPL 22
>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 654
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 262 AXRSPQSXDQAHNRVSSVFHPVLQYEPDDRRRALPSNNLLGSFSSRVR 405
A S + D HN++ + + +P+DRR A LL ++ R
Sbjct: 343 ASSSSSAPDDEHNKIEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNR 390
>At1g60720.1 68414.m06835 hypothetical protein
Length = 289
Score = 27.1 bits (57), Expect = 4.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 203 FWHDGWTSPGQL 238
FWHD WTS G L
Sbjct: 25 FWHDSWTSLGPL 36
>At1g02020.2 68414.m00122 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 543
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 246 GVQSWPGEVHPSCQNFDPAKAY 181
G +WP V+PS N P +AY
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAY 185
>At1g02020.1 68414.m00121 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 642
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 246 GVQSWPGEVHPSCQNFDPAKAY 181
G +WP V+PS N P +AY
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAY 185
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,329,508
Number of Sequences: 28952
Number of extensions: 183494
Number of successful extensions: 421
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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