Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0415.Seq
         (404 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...   124   7e-28
UniRef50_A0L978 Cluster: Putative uncharacterized protein; n=1; ...    32   5.0  
UniRef50_Q48457 Cluster: Uncharacterized membrane protein in cps...    31   6.6  
UniRef50_A0D4R9 Cluster: Chromosome undetermined scaffold_38, wh...    31   8.7  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
           Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score =  124 bits (299), Expect = 7e-28
 Identities = 62/76 (81%), Positives = 62/76 (81%)
 Frame = -3

Query: 228 DAYYNSSPDGSYNAGTRDSSISNKKKASSTIYADKDQIRAANDRXXXXXXXXXXXXXXSG 49
           DAYYNSSPDGSYNAGTRDSSISNKKKASSTIYADKDQIRAANDR              SG
Sbjct: 254 DAYYNSSPDGSYNAGTRDSSISNKKKASSTIYADKDQIRAANDRSSSKQLKQSSAQISSG 313

Query: 48  PEGTSVSSKDRQYSND 1
           PEGTSVSSKDRQYSND
Sbjct: 314 PEGTSVSSKDRQYSND 329



 Score = 71.3 bits (167), Expect = 7e-12
 Identities = 36/50 (72%), Positives = 36/50 (72%)
 Frame = -1

Query: 404 DSSRRSNAYYXRDSDGXXXXXXXXXXXXXSKNDNVFVYRTKDSIGGQAKS 255
           DSSRRSNAYY RDSDG             SKNDNVFVYRTKDSIGGQAKS
Sbjct: 195 DSSRRSNAYYNRDSDGSESAGLSDRSASSSKNDNVFVYRTKDSIGGQAKS 244



 Score = 37.5 bits (83), Expect = 0.10
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -3

Query: 228 DAYYNSSPDGSYNAGTRDSSISNKKKASSTIYADKDQIRAANDRXXXXXXXXXXXXXXSG 49
           +AYYN   DGS +AG  D S S+ K  +  +Y  KD I                    S 
Sbjct: 201 NAYYNRDSDGSESAGLSDRSASSSKNDNVFVYRTKDSIGGQAKSSRSSHSQESDAYYNSS 260

Query: 48  PEGT-SVSSKDRQYSN 4
           P+G+ +  ++D   SN
Sbjct: 261 PDGSYNAGTRDSSISN 276


>UniRef50_A0L978 Cluster: Putative uncharacterized protein; n=1;
           Magnetococcus sp. MC-1|Rep: Putative uncharacterized
           protein - Magnetococcus sp. (strain MC-1)
          Length = 142

 Score = 31.9 bits (69), Expect = 5.0
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -1

Query: 275 IGGQAKSQDHLIHKRATLIITPVRMVATTLVRETVQFLTKRRQALPSTLIKIKYAPR 105
           IG   K + +  ++R TL+++   +V     R+T +F+T      P +L KIK +P+
Sbjct: 84  IGWDGKRKRYDNNRRVTLVVSNYVVVIALTSRKTARFITAYVADTPRSLEKIKASPK 140


>UniRef50_Q48457 Cluster: Uncharacterized membrane protein in cps
           region; n=1; Klebsiella pneumoniae|Rep: Uncharacterized
           membrane protein in cps region - Klebsiella pneumoniae
          Length = 485

 Score = 31.5 bits (68), Expect = 6.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 198 YHPDWSYNKRRSLVNEMILRFRLSSNRILGAVNKYI 305
           YHP W  +K R +  +++  F L+ + IL  +N  I
Sbjct: 195 YHPTWKRSKLREIKKQLLFSFYLTLDSILNYINSSI 230


>UniRef50_A0D4R9 Cluster: Chromosome undetermined scaffold_38, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_38,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 698

 Score = 31.1 bits (67), Expect = 8.7
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -1

Query: 281 DSIGGQAKSQDHLIHKRATLIITPVRMVATTLVRETVQFLTKRRQ 147
           D  G   ++Q HL++K+ATL I P+  + ++L+ +  Q+  + +Q
Sbjct: 641 DFYGVLYENQIHLVYKQATLSILPLLYLDSSLILKLTQYQVQHQQ 685


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 365,139,781
Number of Sequences: 1657284
Number of extensions: 6190506
Number of successful extensions: 13863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13862
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)