Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0415.Seq
         (404 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   0.86 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   0.86 
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   3.5  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   6.1  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    20   8.0  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 36  RCPLARRRFERCSVLTVSKKNDHSRRVF 119
           RCP+  RRF + S +T   +     R +
Sbjct: 51  RCPVCDRRFSQSSSVTTHMRTHSGERPY 78


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 36  RCPLARRRFERCSVLTVSKKNDHSRRVF 119
           RCP+  RRF + S +T   +     R +
Sbjct: 307 RCPVCDRRFSQSSSVTTHMRTHSGERPY 334


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 74  RAALKSPPGQRAPL 33
           R++ KS PG+R PL
Sbjct: 241 RSSQKSAPGKRTPL 254


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 361 TAQNPLD*VTVVLLP 317
           T  NPLD VT  LLP
Sbjct: 350 TPPNPLDAVTSGLLP 364


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 279 ILGAVNKYIIIF 314
           I+GAV  Y++IF
Sbjct: 370 IVGAVTTYLVIF 381


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,856
Number of Sequences: 336
Number of extensions: 1664
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)