Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0415.Seq
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    25   3.4  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   4.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.9  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.8  

>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 6  SSIAYPYCLQRCPLAR 53
          SSI Y YCLQR  L R
Sbjct: 46 SSIVYAYCLQRKQLGR 61


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 2   SFEYCLSLLLTEVPSGPEEI*ALLCFNCFEEERS 103
           S EY   L   E+P+G   I A+LC++ + +E S
Sbjct: 797 SMEY---LKFRELPAGQNAIVAILCYSGYNQEDS 827


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -1

Query: 251  DHLIHKRATLIITPVRMVATTLVRETVQFLTKRRQALPSTLIKIKYA 111
            +++    A+LI+     + TT+    +Q +     +LP+ L+ IK A
Sbjct: 2661 NYIPQAHASLILDQFNAILTTIFNNPLQQIEILENSLPTQLLSIKPA 2707


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 168 ISNKKKASSTIYADKDQIRAAND 100
           +S K++ASS  + D +Q+  AND
Sbjct: 1   MSRKRQASSNDFFDMEQLLIAND 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,513,045
Number of Sequences: 5004
Number of extensions: 26727
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)